Package - phast

Package: phast
apt-get install phast

Manuals in package:

Documentations in package:

phast

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/phast/phast_1.7+dfsg-2_amd64.deb (Size: 3.4MiB)

Property	Value
Package	phast
Version	1.7+dfsg-2
Installed-Size	30514
Maintainer	Debian Med Packaging Team
Architecture	amd64
Depends	libc6 (>= 2.34), liblapack3 \| liblapack.so.3, libpcre2-8-0 (>= 10.22)
Description	phylogenetic analysis with space/time models
Description-md5	5260b2251e211c62f521fa0303e12a8d
Homepage	http://compgen.cshl.edu/phast/
Section	science
Priority	optional
Filename	pool/main/p/phast/phast_1.7+dfsg-2_amd64.deb
Size	3562756
MD5sum	49df61bf8c45c126e801305618af3c04
SHA256	67ba83044349512f8190d9d6ccc554d9741c52c3a654c00b10ce52e4d544a4d0

Files in package

/usr/bin/all_dists
/usr/bin/base_evolve
/usr/bin/chooseLines
/usr/bin/clean_genes
/usr/bin/consEntropy
/usr/bin/convert_coords
/usr/bin/display_rate_matrix
/usr/bin/dless
/usr/bin/dlessP
/usr/bin/draw_tree
/usr/bin/eval_predictions
/usr/bin/exoniphy
/usr/bin/hmm_train
/usr/bin/hmm_tweak
/usr/bin/hmm_view
/usr/bin/indelFit
/usr/bin/indelHistory
/usr/bin/maf_parse
/usr/bin/makeHKY
/usr/bin/modFreqs
/usr/bin/msa_diff
/usr/bin/msa_split
/usr/bin/msa_view
/usr/bin/pbsDecode
/usr/bin/pbsEncode
/usr/bin/pbsScoreMatrix
/usr/bin/pbsTrain
/usr/bin/phast
/usr/bin/phastBias
/usr/bin/phastCons
/usr/bin/phastMotif
/usr/bin/phastOdds
/usr/bin/phyloBoot
/usr/bin/phyloFit
/usr/bin/phyloP
/usr/bin/prequel
/usr/bin/refeature
/usr/bin/stringiphy
/usr/bin/treeGen
/usr/bin/tree_doctor
/usr/share/doc/phast/changelog.Debian.gz
/usr/share/doc/phast/copyright
/usr/share/doc/phast/examples/Makefile.xz
/usr/share/doc/phast/examples/chr22.14500000-15500000.fa.xz
/usr/share/doc/phast/examples/chr22.14500000-15500000.gp.xz
/usr/share/doc/phast/examples/chr22.14500000-15500000.maf.xz
/usr/share/doc/phast/examples/chr22_correct.oss.gz.xz
/usr/share/doc/phast/examples/cons-4way_correct.dat.xz
/usr/share/doc/phast/examples/cons-hmr_correct.dat.xz
/usr/share/doc/phast/examples/cons_correct.dat.xz
/usr/share/doc/phast/examples/elemcfa.bed
/usr/share/doc/phast/examples/elements-4way_correct.bed
/usr/share/doc/phast/examples/elements_correct.bed
/usr/share/doc/phast/examples/f81.mod
/usr/share/doc/phast/examples/hky-dg.mod
/usr/share/doc/phast/examples/hky-em.mod
/usr/share/doc/phast/examples/hky.mod
/usr/share/doc/phast/examples/hmrc.ss.xz
/usr/share/doc/phast/examples/hmrc_correct.fa.xz
/usr/share/doc/phast/examples/hmrc_summary_correct
/usr/share/doc/phast/examples/hpmrc-rev-dg-global.mod
/usr/share/doc/phast/examples/hpmrc.fa.xz
/usr/share/doc/phast/examples/hpmrc.ss.xz
/usr/share/doc/phast/examples/jc.mod
/usr/share/doc/phast/examples/rev-dg.mod
/usr/share/doc/phast/examples/rev-em.mod
/usr/share/doc/phast/examples/rev-gaps.mod
/usr/share/doc/phast/examples/rev-hm.mod
/usr/share/doc/phast/examples/rev-hmc-lnl.mod
/usr/share/doc/phast/examples/rev-hmc.postprob.xz
/usr/share/doc/phast/examples/rev-hmr.mod
/usr/share/doc/phast/examples/rev-hmr2.mod
/usr/share/doc/phast/examples/rev-lnl.mod
/usr/share/doc/phast/examples/rev.mod
/usr/share/doc/phast/examples/rev.postprob.xz
/usr/share/doc/phast/examples/testPhast.pl.xz
/usr/share/doc/phast/examples/test_phast.sh.xz
/usr/share/doc/phast/examples/unrest-cow-anc.mod
/usr/share/doc/phast/examples/unrest.mod
/usr/share/man/man1/all_dists.1.gz
/usr/share/man/man1/base_evolve.1.gz
/usr/share/man/man1/chooseLines.1.gz
/usr/share/man/man1/clean_genes.1.gz
/usr/share/man/man1/consEntropy.1.gz
/usr/share/man/man1/convert_coords.1.gz
/usr/share/man/man1/display_rate_matrix.1.gz
/usr/share/man/man1/dless.1.gz
/usr/share/man/man1/dlessP.1.gz
/usr/share/man/man1/draw_tree.1.gz
/usr/share/man/man1/eval_predictions.1.gz
/usr/share/man/man1/exoniphy.1.gz
/usr/share/man/man1/hmm_train.1.gz
/usr/share/man/man1/hmm_tweak.1.gz
/usr/share/man/man1/hmm_view.1.gz
/usr/share/man/man1/indelFit.1.gz
/usr/share/man/man1/indelHistory.1.gz
/usr/share/man/man1/maf_parse.1.gz
/usr/share/man/man1/makeHKY.1.gz
/usr/share/man/man1/modFreqs.1.gz
/usr/share/man/man1/msa_diff.1.gz
/usr/share/man/man1/msa_split.1.gz
/usr/share/man/man1/msa_view.1.gz
/usr/share/man/man1/pbsDecode.1.gz
/usr/share/man/man1/pbsEncode.1.gz
/usr/share/man/man1/pbsScoreMatrix.1.gz
/usr/share/man/man1/pbsTrain.1.gz
/usr/share/man/man1/phast.1.gz
/usr/share/man/man1/phastBias.1.gz
/usr/share/man/man1/phastCons.1.gz
/usr/share/man/man1/phastMotif.1.gz
/usr/share/man/man1/phastOdds.1.gz
/usr/share/man/man1/phyloBoot.1.gz
/usr/share/man/man1/phyloFit.1.gz
/usr/share/man/man1/phyloP.1.gz
/usr/share/man/man1/prequel.1.gz
/usr/share/man/man1/refeature.1.gz
/usr/share/man/man1/stringiphy.1.gz
/usr/share/man/man1/treeGen.1.gz
/usr/share/man/man1/tree_doctor.1.gz
/usr/share/phast/data/exoniphy/default-no-cns.cm
/usr/share/phast/data/exoniphy/default.cm
/usr/share/phast/data/exoniphy/mammals/cftr25_hybrid.nh
/usr/share/phast/data/exoniphy/mammals/default-indels-no-cns.hmm
/usr/share/phast/data/exoniphy/mammals/default-indels.hmm
/usr/share/phast/data/exoniphy/mammals/default-no-cns.hmm
/usr/share/phast/data/exoniphy/mammals/default.hmm
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-5.mod
/usr/share/phast/data/exoniphy/mammals/hky.3'splice-6.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-5.mod
/usr/share/phast/data/exoniphy/mammals/hky.5'splice-6.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds3'ss.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.prestart-4.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.start-3.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-1.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-2.mod
/usr/share/phast/data/exoniphy/mammals/hky.stop-3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cds-3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.cns.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.ncns.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc1.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc2.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc3.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc4.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc5.mod
/usr/share/phast/data/exoniphy/mammals/r3.noncoding.mod
/usr/share/phast/data/exoniphy/models
/usr/share/phast/data/exoniphy/models-gc1
/usr/share/phast/data/exoniphy/models-gc2
/usr/share/phast/data/exoniphy/models-gc3
/usr/share/phast/data/exoniphy/models-gc4
/usr/share/phast/data/exoniphy/models-gc5
/usr/share/phast/data/exoniphy/models-no-cns
/usr/share/phast/data/exoniphy/models-no-cns-gc1
/usr/share/phast/data/exoniphy/models-no-cns-gc2
/usr/share/phast/data/exoniphy/models-no-cns-gc3
/usr/share/phast/data/exoniphy/models-no-cns-gc4
/usr/share/phast/data/exoniphy/models-no-cns-gc5
/usr/share/phast/data/phastCons/simple-coding-indels.hmm
/usr/share/phast/data/phastCons/simple-coding.hmm