Package - pftools

Package:  pftools
apt-get install pftools
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/pftools/pftools_3.2.12-1_amd64.deb (Size: 23.6MiB)

PropertyValue
Packagepftools
Version3.2.12-1
Installed-Size52597
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.33), libgfortran5 (>= 8), libpcre2-8-0 (>= 10.22), libfile-slurp-perl
Descriptionbuild and search protein and DNA generalized profiles
Description-md54e95fd2926a532a35d8b09eb65b029b1
Homepagehttps://github.com/sib-swiss/pftools3
Sectionscience
Priorityoptional
Filenamepool/main/p/pftools/pftools_3.2.12-1_amd64.deb
Size24782188
MD5sum5c0c7ae7cafa197667aeb59eeeed848f
SHA25655b4bb153a63706f16e3150bfba2e85e8deac5f90bada8da879df7cd80ffd63c

Files in package

  • /usr/bin/2ft
  • /usr/bin/6ft
  • /usr/bin/compare_2_profiles.pl
  • /usr/bin/fasta_to_fastq.pl
  • /usr/bin/make_iupac_cmp.pl
  • /usr/bin/pfcalibrateV3
  • /usr/bin/pfdump
  • /usr/bin/pfemit
  • /usr/bin/pfgtop
  • /usr/bin/pfhtop
  • /usr/bin/pfindex
  • /usr/bin/pfmake
  • /usr/bin/pfpam
  • /usr/bin/pfscale
  • /usr/bin/pfscan
  • /usr/bin/pfscanV3
  • /usr/bin/pfsearch
  • /usr/bin/pfsearchV3
  • /usr/bin/pfw
  • /usr/bin/ps_scan.pl
  • /usr/bin/psa2msa
  • /usr/bin/ptof
  • /usr/bin/ptoh
  • /usr/bin/scramble_fasta.pl
  • /usr/bin/sort_fasta.pl
  • /usr/bin/split_profile_file.pl
  • /usr/share/doc/pftools/README.Debian
  • /usr/share/doc/pftools/README.md.gz
  • /usr/share/doc/pftools/README.pftools.v2.3.md.gz
  • /usr/share/doc/pftools/README.test
  • /usr/share/doc/pftools/btt129.pdf.gz
  • /usr/share/doc/pftools/changelog.Debian.gz
  • /usr/share/doc/pftools/changelog.gz
  • /usr/share/doc/pftools/copyright
  • /usr/share/doc/pftools/examples/16S.prf
  • /usr/share/doc/pftools/examples/CMakeLists.txt
  • /usr/share/doc/pftools/examples/CVPBR322.embl
  • /usr/share/doc/pftools/examples/Calibration/reversed.seq
  • /usr/share/doc/pftools/examples/Calibration/window20.seq
  • /usr/share/doc/pftools/examples/FamilyProfile/DoubleProfile.prf
  • /usr/share/doc/pftools/examples/FamilyProfile/sequence.seq
  • /usr/share/doc/pftools/examples/FamilyProfile/sh2.prf
  • /usr/share/doc/pftools/examples/GTPA_HUMAN.dat
  • /usr/share/doc/pftools/examples/MYSA_HUMAN
  • /usr/share/doc/pftools/examples/Matrices/blosum100.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum30.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum45.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum50.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum62.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum65.cmp
  • /usr/share/doc/pftools/examples/Matrices/blosum80.cmp
  • /usr/share/doc/pftools/examples/Matrices/dna_50_40.cmp
  • /usr/share/doc/pftools/examples/Matrices/gonnet.cmp
  • /usr/share/doc/pftools/examples/Matrices/iupac_50_40.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam120.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam160.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam200.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam220.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam250.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam30.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam40.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam400.cmp
  • /usr/share/doc/pftools/examples/Matrices/pam80.cmp
  • /usr/share/doc/pftools/examples/PS00741_PS50010.dat
  • /usr/share/doc/pftools/examples/R76849.seq
  • /usr/share/doc/pftools/examples/RF00177.msa
  • /usr/share/doc/pftools/examples/SRR9619541.sample.fastq
  • /usr/share/doc/pftools/examples/Toolbox.pm
  • /usr/share/doc/pftools/examples/VAV_HUMAN.seq
  • /usr/share/doc/pftools/examples/VAV_RAT.seq
  • /usr/share/doc/pftools/examples/all.prf
  • /usr/share/doc/pftools/examples/all.seq
  • /usr/share/doc/pftools/examples/coils.prf
  • /usr/share/doc/pftools/examples/ecp.prf
  • /usr/share/doc/pftools/examples/hiv.fastq
  • /usr/share/doc/pftools/examples/hiv.prf
  • /usr/share/doc/pftools/examples/htop_issue.hmm
  • /usr/share/doc/pftools/examples/patterns/ambiguities.hit
  • /usr/share/doc/pftools/examples/patterns/ambiguities_excluded.hit
  • /usr/share/doc/pftools/examples/patterns/anchorC.hit
  • /usr/share/doc/pftools/examples/patterns/anchorN.hit
  • /usr/share/doc/pftools/examples/patterns/fully_defined.hit
  • /usr/share/doc/pftools/examples/patterns/multiple_matches.hit
  • /usr/share/doc/pftools/examples/patterns/repetition.hit
  • /usr/share/doc/pftools/examples/patterns/repetition_range.hit
  • /usr/share/doc/pftools/examples/patterns/undefined.hit
  • /usr/share/doc/pftools/examples/pfam_sh3.hmm
  • /usr/share/doc/pftools/examples/prosite13.prf
  • /usr/share/doc/pftools/examples/rand_dna.prf
  • /usr/share/doc/pftools/examples/rand_dna.seq
  • /usr/share/doc/pftools/examples/reverse/forward.msa
  • /usr/share/doc/pftools/examples/reverse/forward.prf
  • /usr/share/doc/pftools/examples/reverse/forward.seq
  • /usr/share/doc/pftools/examples/reverse/forward_dna.seq
  • /usr/share/doc/pftools/examples/reverse/forward_dna_shift5.seq
  • /usr/share/doc/pftools/examples/reverse/reverse.msa
  • /usr/share/doc/pftools/examples/reverse/reverse.prf
  • /usr/share/doc/pftools/examples/reverse/reverse.seq
  • /usr/share/doc/pftools/examples/sample.fastq
  • /usr/share/doc/pftools/examples/score.lis
  • /usr/share/doc/pftools/examples/sh2.prf
  • /usr/share/doc/pftools/examples/sh3.gpr
  • /usr/share/doc/pftools/examples/sh3.msf
  • /usr/share/doc/pftools/examples/sh3.prf
  • /usr/share/doc/pftools/examples/sh3.seq
  • /usr/share/doc/pftools/examples/standard.random
  • /usr/share/doc/pftools/examples/test_V2.sh
  • /usr/share/doc/pftools/examples/test_V3.out
  • /usr/share/doc/pftools/examples/test_V3.sh
  • /usr/share/doc/pftools/examples/test_V3_output.sh.cmake
  • /usr/share/doc/pftools/examples/test_pfsearchV3_iupac.pl
  • /usr/share/doc/pftools/examples/test_pfsearchV3_pattern-regexp.sh.cmake
  • /usr/share/doc/pftools/examples/test_scan_search.pl
  • /usr/share/doc/pftools/posterPfsearchV3SIBdays2013_v0.3.pdf.gz
  • /usr/share/doc/pftools/profile.pdf.gz
  • /usr/share/doc/pftools/profile.txt.gz
  • /usr/share/doc/pftools/run-unit-test
  • /usr/share/lintian/overrides/pftools
  • /usr/share/man/man1/2ft.1.gz
  • /usr/share/man/man1/6ft.1.gz
  • /usr/share/man/man1/pfdump.1.gz
  • /usr/share/man/man1/pfgtop.1.gz
  • /usr/share/man/man1/pfhtop.1.gz
  • /usr/share/man/man1/pfmake.1.gz
  • /usr/share/man/man1/pfscale.1.gz
  • /usr/share/man/man1/pfscan.1.gz
  • /usr/share/man/man1/pfsearch.1.gz
  • /usr/share/man/man1/pfsearchV2.1.gz
  • /usr/share/man/man1/pfsearchV3.1.gz
  • /usr/share/man/man1/pfw.1.gz
  • /usr/share/man/man1/psa2msa.1.gz
  • /usr/share/man/man1/ptof.1.gz
  • /usr/share/man/man1/ptoh.1.gz
  • /usr/share/man/man5/psa.5.gz
  • /usr/share/man/man5/xpsa.5.gz