Package - parsnp

Package:  parsnp
apt-get install parsnp
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/parsnp/parsnp_2.1.3+dfsg-1_amd64.deb (Size: 209.3KiB)

PropertyValue
Packageparsnp
Version2.1.3+dfsg-1
Installed-Size1959
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 14), python3:any, python3-biopython, python3-numpy, python3-pyspoa, python3-tqdm, fasttree, harvest-tools, mummer, phipack, python3, raxml, time
Recommendspython3-dendropy
Descriptionrapid core genome multi-alignment
Description-md5e2e6d59e8a521577f278267009bb94b4
Homepagehttps://harvest.readthedocs.org/en/latest/content/parsnp.html
Sectionscience
Priorityoptional
Filenamepool/main/p/parsnp/parsnp_2.1.3+dfsg-1_amd64.deb
Size214336
MD5sum010fd7464c9b474e8f97af4be78462d3
SHA25670d32d1ca5628174aa799c41632ae8df46b5a2135864bb86017f0c502617b368

Files in package

  • /usr/bin/parsnp
  • /usr/lib/parsnp/parsnp_core
  • /usr/lib/python3/dist-packages/parsnp/extend.py
  • /usr/lib/python3/dist-packages/parsnp/logger.py
  • /usr/lib/python3/dist-packages/parsnp/partition.py
  • /usr/share/doc/parsnp/NEWS.gz
  • /usr/share/doc/parsnp/README.md.gz
  • /usr/share/doc/parsnp/README.test
  • /usr/share/doc/parsnp/changelog.Debian.gz
  • /usr/share/doc/parsnp/copyright
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_3_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_4_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_5_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_9_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Taif_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna
  • /usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna
  • /usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk
  • /usr/share/doc/parsnp/run-unit-test
  • /usr/share/man/man1/parsnp.1.gz
  • /usr/share/parsnp/template.ini