Package - optimir

Package:  optimir
apt-get install optimir
Manuals in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/o/optimir/optimir_1.2-2_all.deb (Size: 1002.4KiB)

PropertyValue
Packageoptimir
Version1.2-2
Installed-Size7403
MaintainerDebian Med Packaging Team
Architectureall
Dependspython3-biopython, python3-pysam, python3:any, bowtie2, cutadapt, samtools
Recommendsr-cran-gridextra, r-cran-ggplot2
DescriptionIntegrating genetic variations in miRNA alignment
Description-md5759e6ff9eaeea6644852b82160c2085c
Homepagehttps://github.com/FlorianThibord/OptimiR
Sectionscience
Priorityoptional
Filenamepool/main/o/optimir/optimir_1.2-2_all.deb
Size1026452
MD5sum1c579a6e7b2b7536984649e00d733a3e
SHA256d469eaf249bf000c43a43baef65f67064ff7dea54425370ab5f6f087efd903e9

Files in package

  • /usr/bin/optimir
  • /usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/requires.txt
  • /usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/optimir/__init__.py
  • /usr/lib/python3/dist-packages/optimir/command_line.py
  • /usr/lib/python3/dist-packages/optimir/libs/__init__.py
  • /usr/lib/python3/dist-packages/optimir/libs/annotate.py
  • /usr/lib/python3/dist-packages/optimir/libs/consistency.py
  • /usr/lib/python3/dist-packages/optimir/libs/essentials.py
  • /usr/lib/python3/dist-packages/optimir/libs/filter_reads.py
  • /usr/lib/python3/dist-packages/optimir/libs/get_counts.py
  • /usr/lib/python3/dist-packages/optimir/libs/library_preparation.py
  • /usr/lib/python3/dist-packages/optimir/libs/mapping.py
  • /usr/lib/python3/dist-packages/optimir/libs/post_process.py
  • /usr/lib/python3/dist-packages/optimir/libs/pre_process.py
  • /usr/lib/python3/dist-packages/optimir/libs/process.py
  • /usr/lib/python3/dist-packages/optimir/libs/read_collapser.py
  • /usr/lib/python3/dist-packages/optimir/libs/scoring.py
  • /usr/lib/python3/dist-packages/optimir/libs/summarize.py
  • /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3
  • /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3
  • /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3
  • /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v21.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v22.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa
  • /usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa
  • /usr/share/doc/optimir/README.md.gz
  • /usr/share/doc/optimir/README.test
  • /usr/share/doc/optimir/changelog.Debian.gz
  • /usr/share/doc/optimir/copyright
  • /usr/share/doc/optimir/examples/Results_example_all/consistency_table.annot
  • /usr/share/doc/optimir/examples/Results_example_all/isomiRs_dist.annot
  • /usr/share/doc/optimir/examples/Results_example_all/isomiRs_specific_abundances.txt
  • /usr/share/doc/optimir/examples/Results_example_all/miRs_and_polymiRs_abundances.txt
  • /usr/share/doc/optimir/examples/Results_example_all/miRs_merged_abundances.txt
  • /usr/share/doc/optimir/examples/Results_example_all/polymiRs_specific_abundances.txt
  • /usr/share/doc/optimir/examples/Results_example_all/polymiRs_table.annot
  • /usr/share/doc/optimir/examples/S1.fq.gz
  • /usr/share/doc/optimir/examples/S2.fq.gz
  • /usr/share/doc/optimir/examples/example_1.sh
  • /usr/share/doc/optimir/examples/example_all.sh
  • /usr/share/doc/optimir/examples/genotypes.vcf
  • /usr/share/doc/optimir/examples/plot_ASE.R
  • /usr/share/doc/optimir/examples/plot_isoDist.R
  • /usr/share/doc/optimir/run-unit-test
  • /usr/share/man/man1/optimir.1.gz