Package - nanopolish

Package:  nanopolish
apt-get install nanopolish
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/n/nanopolish/nanopolish_0.14.0-1+b3_amd64.deb (Size: 2.1MiB)

PropertyValue
Packagenanopolish
Sourcenanopolish (0.14.0-1)
Version0.14.0-1+b3
Installed-Size9639
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-310 (>= 1.14.3), libhts3t64 (>= 1.17), libslow5-0t64 (>= 0.5.1), libstdc++6 (>= 14), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3:any, perl:any
Recommendspython3-biopython, python3-pysam
Suggestsperl, make
Descriptionconsensus caller for nanopore sequencing data
Description-md5c65181cb6cafc3c3d9c0c69affe72640
Homepagehttps://github.com/jts/nanopolish
Sectionscience
Priorityoptional
Filenamepool/main/n/nanopolish/nanopolish_0.14.0-1+b3_amd64.deb
Size2201532
MD5sum1f4d473c73607ef5b729d98afde726b2
SHA2563c3090d2244df36fbb957c88572bb8a8c0a307334e54bf4edc0fafbe31cc5cfb

Files in package

  • /usr/bin/nanopolish
  • /usr/bin/nanopolish_makerange
  • /usr/lib/nanopolish/calculate_methylation_frequency.py
  • /usr/lib/nanopolish/consensus-preprocess.pl
  • /usr/lib/nanopolish/consensus.make
  • /usr/lib/nanopolish/convert_all_models.py
  • /usr/lib/nanopolish/convert_model_to_header.py
  • /usr/lib/nanopolish/dropmodel.py
  • /usr/lib/nanopolish/extract_reads_aligned_to_region.py
  • /usr/lib/nanopolish/import_ont_model.py
  • /usr/lib/nanopolish/import_ont_models_from_dir.sh
  • /usr/lib/nanopolish/nanopolish_makerange.py
  • /usr/lib/nanopolish/nanopolish_merge.py
  • /usr/lib/nanopolish/nanopolish_test
  • /usr/lib/nanopolish/polya_training/dump_signal.py
  • /usr/lib/nanopolish/polya_training/environment.yml
  • /usr/lib/nanopolish/polya_training/hmmplot.py
  • /usr/lib/nanopolish/polya_training/retrain_emission.py
  • /usr/lib/nanopolish/polya_training/workflow.md
  • /usr/lib/nanopolish/reestimate_polya_emissions.py
  • /usr/lib/nanopolish/requirements.txt
  • /usr/share/doc/nanopolish/README.Debian
  • /usr/share/doc/nanopolish/README.md.gz
  • /usr/share/doc/nanopolish/README.test
  • /usr/share/doc/nanopolish/changelog.Debian.amd64.gz
  • /usr/share/doc/nanopolish/changelog.Debian.gz
  • /usr/share/doc/nanopolish/copyright
  • /usr/share/doc/nanopolish/examples/data/LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fast5
  • /usr/share/doc/nanopolish/run-unit-test
  • /usr/share/man/man1/nanopolish.1.gz
  • /usr/share/python3/runtime.d/nanopolish.rtupdate