Package - metaphlan
Primary informations
Download package: http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4+ds-1_all.deb (Size: 1.9MiB)| Property | Value |
|---|---|
| Package | metaphlan |
| Version | 4.0.4+ds-1 |
| Installed-Size | 6185 |
| Maintainer | Debian Med Packaging Team |
| Architecture | all |
| Replaces | metaphlan2 |
| Provides | metaphlan2 |
| Depends | python3-biom-format, python3-biopython, python3-dendropy, python3-h5py, python3-numpy, python3-pandas, python3-pysam, python3-requests, python3-scipy, python3:any, metaphlan2-data, python3-msgpack, python3-packaging, r-base-core, bowtie2 |
| Conflicts | metaphlan2 |
| Description | Metagenomic Phylogenetic Analysis |
| Description-md5 | a763566d3ad6d39c5520b905f564f76f |
| Homepage | https://github.com/biobakery/MetaPhlAn |
| Section | science |
| Priority | optional |
| Filename | pool/main/m/metaphlan/metaphlan_4.0.4+ds-1_all.deb |
| Size | 2009428 |
| MD5sum | 1c817cb3b7c31d344a896b0d90e94157 |
| SHA256 | baa6094b3c2b467a4049dc762312ed834fb63f40c42ab5748d332668bacbac9b |
Files in package
- /usr/bin/add_metadata_tree.py
- /usr/bin/extract_markers.py
- /usr/bin/merge_metaphlan_tables.py
- /usr/bin/metaphlan
- /usr/bin/metaphlan2krona.py
- /usr/bin/plot_tree_graphlan.py
- /usr/bin/read_fastx.py
- /usr/bin/run_treeshrink.py
- /usr/bin/sample2markers.py
- /usr/bin/sgb_to_gtdb_profile.py
- /usr/bin/strain_transmission.py
- /usr/bin/strainphlan
- /usr/bin/treeshrink.py
- /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/PKG-INFO
- /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/dependency_links.txt
- /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/entry_points.txt
- /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/requires.txt
- /usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/top_level.txt
- /usr/lib/python3/dist-packages/metaphlan/__init__.py
- /usr/lib/python3/dist-packages/metaphlan/metaphlan.py
- /usr/lib/python3/dist-packages/metaphlan/metaphlan_databases/README.txt
- /usr/lib/python3/dist-packages/metaphlan/strainphlan.py
- /usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv
- /usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv
- /usr/lib/python3/dist-packages/metaphlan/utils/__init__.py
- /usr/lib/python3/dist-packages/metaphlan/utils/add_metadata_tree.py
- /usr/lib/python3/dist-packages/metaphlan/utils/calculate_diversity.R
- /usr/lib/python3/dist-packages/metaphlan/utils/consensus_markers.py
- /usr/lib/python3/dist-packages/metaphlan/utils/database_controller.py
- /usr/lib/python3/dist-packages/metaphlan/utils/external_exec.py
- /usr/lib/python3/dist-packages/metaphlan/utils/extract_markers.py
- /usr/lib/python3/dist-packages/metaphlan/utils/merge_metaphlan_tables.py
- /usr/lib/python3/dist-packages/metaphlan/utils/metaphlan2krona.py
- /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk
- /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv
- /usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2
- /usr/lib/python3/dist-packages/metaphlan/utils/parallelisation.py
- /usr/lib/python3/dist-packages/metaphlan/utils/phylophlan_controller.py
- /usr/lib/python3/dist-packages/metaphlan/utils/plot_bug.py
- /usr/lib/python3/dist-packages/metaphlan/utils/plot_tree_graphlan.py
- /usr/lib/python3/dist-packages/metaphlan/utils/pyphlan.py
- /usr/lib/python3/dist-packages/metaphlan/utils/read_fastx.py
- /usr/lib/python3/dist-packages/metaphlan/utils/sample2markers.py
- /usr/lib/python3/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py
- /usr/lib/python3/dist-packages/metaphlan/utils/strain_transmission.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_d.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/CITATION
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/INDEX
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py
- /usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/treeshrink.py
- /usr/lib/python3/dist-packages/metaphlan/utils/util_fun.py
- /usr/share/doc/metaphlan/README.html
- /usr/share/doc/metaphlan/changelog.Debian.gz
- /usr/share/doc/metaphlan/changelog.gz
- /usr/share/doc/metaphlan/copyright
- /usr/share/doc/metaphlan/images/1574126761-RAxML_bestTree.s__Bacteroides_caccae.tree.metadata.png
- /usr/share/doc/metaphlan/images/1771497600-snp_distance.png
- /usr/share/doc/metaphlan/images/476974413-tree_alignment.png
- /usr/share/doc/metaphlan/images/get-pngs
- /usr/share/lintian/overrides/metaphlan
- /usr/share/man/man1/metaphlan.1.gz
- /usr/share/man/man1/strainphlan.1.gz