Package - lumpy-sv

Package:  lumpy-sv
apt-get install lumpy-sv
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-7+b1_amd64.deb (Size: 205.3KiB)

PropertyValue
Packagelumpy-sv
Sourcelumpy-sv (0.3.1+dfsg-7)
Version0.3.1+dfsg-7+b1
Installed-Size689
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgzstream0 (>= 1.5+dfsg), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1), python3:any, samblaster, samtools, python3, python3-pysam, python3-numpy, bamkit
Recommendssambamba
Descriptiongeneral probabilistic framework for structural variant discovery
Description-md5815516aa8931beee4eee9025a0f06630
Homepagehttps://github.com/arq5x/lumpy-sv
Sectionscience
Priorityoptional
Filenamepool/main/l/lumpy-sv/lumpy-sv_0.3.1+dfsg-7+b1_amd64.deb
Size210248
MD5sum61a56b4d39421305bf3612b117272b63
SHA2563bfb3382047a056b2d7f8c0de4cc7b3530fcc16d0ab416ae2e564b60bed27221

Files in package

  • /etc/lumpy-sv/lumpyexpress.config
  • /usr/bin/lumpy
  • /usr/bin/lumpy_filter
  • /usr/bin/lumpyexpress
  • /usr/share/doc/lumpy-sv/README.md.gz
  • /usr/share/doc/lumpy-sv/changelog.Debian.amd64.gz
  • /usr/share/doc/lumpy-sv/changelog.Debian.gz
  • /usr/share/doc/lumpy-sv/copyright
  • /usr/share/lumpy-sv/scripts/bedpe_sort.py
  • /usr/share/lumpy-sv/scripts/check_sorting.py
  • /usr/share/lumpy-sv/scripts/cnvanator_to_bedpes.py
  • /usr/share/lumpy-sv/scripts/extract-sites.py
  • /usr/share/lumpy-sv/scripts/extractSplitReads_BwaMem
  • /usr/share/lumpy-sv/scripts/get_coverages.py
  • /usr/share/lumpy-sv/scripts/get_exclude_regions.py
  • /usr/share/lumpy-sv/scripts/l_bp.py
  • /usr/share/lumpy-sv/scripts/l_merge.py
  • /usr/share/lumpy-sv/scripts/l_sort.py
  • /usr/share/lumpy-sv/scripts/lumpy_smooth
  • /usr/share/lumpy-sv/scripts/lumpyexpress
  • /usr/share/lumpy-sv/scripts/lumpyexpress.config
  • /usr/share/lumpy-sv/scripts/pairend_distro.py
  • /usr/share/lumpy-sv/scripts/par-svtyper.sh
  • /usr/share/lumpy-sv/scripts/prob_bedpe_to_bedgraph.py
  • /usr/share/lumpy-sv/scripts/run_histo.sh
  • /usr/share/lumpy-sv/scripts/split_unmapped_to_fasta.pl
  • /usr/share/lumpy-sv/scripts/vcfToBedpe
  • /usr/share/man/man1/lumpy.1.gz
  • /usr/share/man/man1/lumpy_filter.1.gz
  • /usr/share/man/man1/lumpyexpress.1.gz
  • /usr/share/python3/runtime.d/lumpy-sv.rtupdate