Package - libpicard-java-doc

Package: libpicard-java-doc
apt-get install libpicard-java-doc

Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/p/picard-tools/libpicard-java-doc_3.3.0+dfsg-2_all.deb (Size: 685.0KiB)

Property	Value
Package	libpicard-java-doc
Source	picard-tools
Version	3.3.0+dfsg-2
Installed-Size	16892
Maintainer	Debian Med Packaging Team
Architecture	all
Depends	libjs-jquery
Description	Documentation for the java picard library
Description-md5	2ec6c008270f52537984bd109df9341e
Multi-Arch	foreign
Homepage	https://broadinstitute.github.io/picard/
Section	doc
Priority	optional
Filename	pool/main/p/picard-tools/libpicard-java-doc_3.3.0+dfsg-2_all.deb
Size	701448
MD5sum	cc114e543f8cb471b0382c0f92902821
SHA256	03944b8dac65897c4c50240e41a7f31579f61edb953af8efd1411684a8a70d84

Files in package

/usr/share/doc-base/libpicard-java-doc.libpicard-java-doc
/usr/share/doc/libpicard-java-doc/changelog.Debian.gz
/usr/share/doc/libpicard-java-doc/copyright
/usr/share/doc/libpicard-java/api/allclasses-index.html
/usr/share/doc/libpicard-java/api/allpackages-index.html
/usr/share/doc/libpicard-java/api/constant-values.html
/usr/share/doc/libpicard-java/api/copy.svg
/usr/share/doc/libpicard-java/api/deprecated-list.html
/usr/share/doc/libpicard-java/api/element-list
/usr/share/doc/libpicard-java/api/help-doc.html
/usr/share/doc/libpicard-java/api/index-all.html
/usr/share/doc/libpicard-java/api/index.html
/usr/share/doc/libpicard-java/api/jquery/external/jquery/jquery.js
/usr/share/doc/libpicard-java/api/legal/ASSEMBLY_EXCEPTION
/usr/share/doc/libpicard-java/api/legal/jquery.md
/usr/share/doc/libpicard-java/api/legal/jqueryUI.md
/usr/share/doc/libpicard-java/api/link.svg
/usr/share/doc/libpicard-java/api/member-search-index.js
/usr/share/doc/libpicard-java/api/module-search-index.js
/usr/share/doc/libpicard-java/api/overview-summary.html
/usr/share/doc/libpicard-java/api/overview-tree.html
/usr/share/doc/libpicard-java/api/package-search-index.js
/usr/share/doc/libpicard-java/api/picard/PicardException.html
/usr/share/doc/libpicard-java/api/picard/Test.html
/usr/share/doc/libpicard-java/api/picard/analysis/AbstractWgsMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/AdapterUtility.html
/usr/share/doc/libpicard-java/api/picard/analysis/AlignmentSummaryMetrics.Category.html
/usr/share/doc/libpicard-java/api/picard/analysis/AlignmentSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/AlignmentSummaryMetricsCollector.GroupAlignmentSummaryMetricsPerUnitMetricCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/AlignmentSummaryMetricsCollector.IndividualAlignmentSummaryMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/AlignmentSummaryMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/BaseDistributionByCycleMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/ChimeraUtil.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectAlignmentSummaryMetrics.CollectAlignmentRefArgCollection.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectAlignmentSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectBaseDistributionByCycle.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectGcBiasMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectInsertSizeMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectJumpingLibraryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectMultipleMetrics.Program.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectMultipleMetrics.ProgramInterface.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectMultipleMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectOxoGMetrics.CpcgMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectOxoGMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetrics.QualityYieldMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetrics.QualityYieldMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsFlow.QualityYieldMetricsCollectorFlow.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsFlow.QualityYieldMetricsFlow.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsFlow.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsSNVQ.QualityYieldMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsSNVQ.QualityYieldMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectQualityYieldMetricsSNVQ.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectRawWgsMetrics.RawWgsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectRawWgsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectRnaSeqMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectRrbsMetrics.CollectRrbsMetricsReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectRrbsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetrics.CollectWgsMetricsIntervalArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetrics.WgsMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage.Category.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverageCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.html
/usr/share/doc/libpicard-java/api/picard/analysis/CompareMetrics.MetricComparisonDifferences.html
/usr/share/doc/libpicard-java/api/picard/analysis/CompareMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/CounterManager.Counter.html
/usr/share/doc/libpicard-java/api/picard/analysis/CounterManager.html
/usr/share/doc/libpicard-java/api/picard/analysis/FastWgsMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/FingerprintingDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/FingerprintingSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/GcBiasDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/GcBiasMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/GcBiasSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/GcBiasUtils.html
/usr/share/doc/libpicard-java/api/picard/analysis/InsertSizeMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/JumpingLibraryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/MeanQualityByCycle.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.MergeByAdding.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.MergeByAssertEquals.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.MergingIsManual.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.NoMergingIsDerived.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.NoMergingKeepsValue.html
/usr/share/doc/libpicard-java/api/picard/analysis/MergeableMetricBase.html
/usr/share/doc/libpicard-java/api/picard/analysis/MetricAccumulationLevel.html
/usr/share/doc/libpicard-java/api/picard/analysis/QualityScoreDistribution.html
/usr/share/doc/libpicard-java/api/picard/analysis/RnaSeqMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/RrbsCpgDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/RrbsMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/RrbsSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/SinglePassSamProgram.html
/usr/share/doc/libpicard-java/api/picard/analysis/TheoreticalSensitivity.RouletteWheel.html
/usr/share/doc/libpicard-java/api/picard/analysis/TheoreticalSensitivity.html
/usr/share/doc/libpicard-java/api/picard/analysis/TheoreticalSensitivityMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/WgsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/WgsMetricsProcessor.html
/usr/share/doc/libpicard-java/api/picard/analysis/WgsMetricsProcessorImpl.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/CollectSequencingArtifactMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/ConvertSequencingArtifactToOxoG.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/ErrorSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/SequencingArtifactMetrics.BaitBiasDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/SequencingArtifactMetrics.BaitBiasSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/SequencingArtifactMetrics.PreAdapterDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/SequencingArtifactMetrics.PreAdapterSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/SequencingArtifactMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/Transition.Base.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/Transition.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/package-summary.html
/usr/share/doc/libpicard-java/api/picard/analysis/artifacts/package-tree.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/CollectHsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/CollectTargetedMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/CollectTargetedPcrMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/HsMetricCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/HsMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/InsertSizeMetricsCollector.PerUnitInsertSizeMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/InsertSizeMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/PanelMetricsBase.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/RnaSeqMetricsCollector.PerUnitRnaSeqMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/RnaSeqMetricsCollector.StrandSpecificity.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/RnaSeqMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetMetricsBase.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetMetricsCollector.Coverage.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetMetricsCollector.PerUnitTargetMetricCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetedPcrMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/TargetedPcrMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/package-summary.html
/usr/share/doc/libpicard-java/api/picard/analysis/directed/package-tree.html
/usr/share/doc/libpicard-java/api/picard/analysis/package-summary.html
/usr/share/doc/libpicard-java/api/picard/analysis/package-tree.html
/usr/share/doc/libpicard-java/api/picard/analysis/replicates/CollectIndependentReplicateMetrics.html
/usr/share/doc/libpicard-java/api/picard/analysis/replicates/IndependentReplicateMetric.html
/usr/share/doc/libpicard-java/api/picard/analysis/replicates/package-summary.html
/usr/share/doc/libpicard-java/api/picard/analysis/replicates/package-tree.html
/usr/share/doc/libpicard-java/api/picard/annotation/AnnotationException.html
/usr/share/doc/libpicard-java/api/picard/annotation/Gene.Transcript.Exon.html
/usr/share/doc/libpicard-java/api/picard/annotation/Gene.Transcript.html
/usr/share/doc/libpicard-java/api/picard/annotation/Gene.html
/usr/share/doc/libpicard-java/api/picard/annotation/GeneAnnotationReader.html
/usr/share/doc/libpicard-java/api/picard/annotation/LocusFunction.html
/usr/share/doc/libpicard-java/api/picard/annotation/RefFlatReader.RefFlatColumns.html
/usr/share/doc/libpicard-java/api/picard/annotation/RefFlatReader.html
/usr/share/doc/libpicard-java/api/picard/annotation/SortGff.html
/usr/share/doc/libpicard-java/api/picard/annotation/package-summary.html
/usr/share/doc/libpicard-java/api/picard/annotation/package-tree.html
/usr/share/doc/libpicard-java/api/picard/arrays/BafRegressMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/CollectArraysVariantCallingMetrics.ArraysControlCodesSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/CollectArraysVariantCallingMetrics.ArraysVariantCallingDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/CollectArraysVariantCallingMetrics.ArraysVariantCallingSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/CollectArraysVariantCallingMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/CombineGenotypingArrayVcfs.html
/usr/share/doc/libpicard-java/api/picard/arrays/CreateBafRegressMetricsFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/CreateVerifyIDIntensityContaminationMetricsFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/GtcToVcf.html
/usr/share/doc/libpicard-java/api/picard/arrays/MergePedIntoVcf.html
/usr/share/doc/libpicard-java/api/picard/arrays/VcfToAdpc.html
/usr/share/doc/libpicard-java/api/picard/arrays/VerifyIDIntensityContaminationMetrics.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/ArraysControlInfo.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/BpmToNormalizationManifestCsv.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/Build37ExtendedIlluminaManifest.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.Flag.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreator.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/CompareGtcFiles.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/CreateExtendedIlluminaManifest.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaAdpcFileWriter.Record.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaAdpcFileWriter.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaBPMFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaBPMLocusEntry.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaGenotype.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaManifest.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaManifestRecord.IlluminaStrand.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/IlluminaManifestRecord.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumDataFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumEGTFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumFileTOC.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumGTCFile.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumGTCRecord.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumNormalizationManifest.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumTransformation.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumVcfFields.GENOTYPE_VALUES.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/InfiniumVcfFields.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/package-summary.html
/usr/share/doc/libpicard-java/api/picard/arrays/illumina/package-tree.html
/usr/share/doc/libpicard-java/api/picard/arrays/package-summary.html
/usr/share/doc/libpicard-java/api/picard/arrays/package-tree.html
/usr/share/doc/libpicard-java/api/picard/cmdline/CommandLineDefaults.html
/usr/share/doc/libpicard-java/api/picard/cmdline/CommandLineProgram.html
/usr/share/doc/libpicard-java/api/picard/cmdline/CommandLineSyntaxTranslater.html
/usr/share/doc/libpicard-java/api/picard/cmdline/PicardCommandLine.html
/usr/share/doc/libpicard-java/api/picard/cmdline/StandardOptionDefinitions.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/EmptyOutputArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/IntervalArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/OptionalReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/OutputArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/ReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/RequiredOutputArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/RequiredReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/package-summary.html
/usr/share/doc/libpicard-java/api/picard/cmdline/argumentcollections/package-tree.html
/usr/share/doc/libpicard-java/api/picard/cmdline/package-summary.html
/usr/share/doc/libpicard-java/api/picard/cmdline/package-tree.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/BaseCallingProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/DiagnosticsAndQCProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/GenotypingArraysProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/IntervalsManipulationProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/OtherProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/ReadDataManipulationProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/ReferenceProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/Testing.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/VariantEvaluationProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/VariantFilteringProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/VariantManipulationProgramGroup.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/package-summary.html
/usr/share/doc/libpicard-java/api/picard/cmdline/programgroups/package-tree.html
/usr/share/doc/libpicard-java/api/picard/fastq/BamToBfqWriter.html
/usr/share/doc/libpicard-java/api/picard/fastq/Casava18ReadNameEncoder.html
/usr/share/doc/libpicard-java/api/picard/fastq/IlluminaReadNameEncoder.html
/usr/share/doc/libpicard-java/api/picard/fastq/ReadNameEncoder.html
/usr/share/doc/libpicard-java/api/picard/fastq/SamToBfqWriter.html
/usr/share/doc/libpicard-java/api/picard/fastq/package-summary.html
/usr/share/doc/libpicard-java/api/picard/fastq/package-tree.html
/usr/share/doc/libpicard-java/api/picard/filter/CountingAdapterFilter.html
/usr/share/doc/libpicard-java/api/picard/filter/CountingDuplicateFilter.html
/usr/share/doc/libpicard-java/api/picard/filter/CountingFilter.html
/usr/share/doc/libpicard-java/api/picard/filter/CountingMapQFilter.html
/usr/share/doc/libpicard-java/api/picard/filter/CountingPairedFilter.html
/usr/share/doc/libpicard-java/api/picard/filter/package-summary.html
/usr/share/doc/libpicard-java/api/picard/filter/package-tree.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CalculateFingerprintMetrics.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CappedHaplotypeProbabilities.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CheckFingerprint.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/ClusterCrosscheckMetrics.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/ClusteredCrosscheckMetric.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/ConvertHaplotypeDatabaseToVcf.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CrosscheckFingerprints.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CrosscheckMetric.DataType.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CrosscheckMetric.FingerprintResult.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CrosscheckMetric.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/CrosscheckReadGroupFingerprints.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/DiploidGenotype.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/DiploidHaplotype.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/ExtractFingerprint.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/Fingerprint.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintChecker.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintIdDetails.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintMetrics.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintResults.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintUtils.VariantContextSet.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/FingerprintUtils.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeBlock.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeMap.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilities.Genotype.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilities.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilitiesFromContaminatorSequence.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilitiesFromGenotype.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilitiesFromGenotypeLikelihoods.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilitiesFromSequence.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/HaplotypeProbabilityOfNormalGivenTumor.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/IdentifyContaminant.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/LiftOverHaplotypeMap.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/MatchResults.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/Snp.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/package-summary.html
/usr/share/doc/libpicard-java/api/picard/fingerprint/package-tree.html
/usr/share/doc/libpicard-java/api/picard/flow/FlowBasedArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/flow/FlowBasedKeyCodec.html
/usr/share/doc/libpicard-java/api/picard/flow/FlowBasedRead.html
/usr/share/doc/libpicard-java/api/picard/flow/FlowReadGroupInfo.html
/usr/share/doc/libpicard-java/api/picard/flow/package-summary.html
/usr/share/doc/libpicard-java/api/picard/flow/package-tree.html
/usr/share/doc/libpicard-java/api/picard/illumina/BarcodeExtractor.BarcodeMatch.html
/usr/share/doc/libpicard-java/api/picard/illumina/BarcodeExtractor.html
/usr/share/doc/libpicard-java/api/picard/illumina/BarcodeMetric.html
/usr/share/doc/libpicard-java/api/picard/illumina/BasecallsConverter.ClusterDataConverter.html
/usr/share/doc/libpicard-java/api/picard/illumina/BasecallsConverter.ConvertedClusterDataWriter.html
/usr/share/doc/libpicard-java/api/picard/illumina/BasecallsConverter.html
/usr/share/doc/libpicard-java/api/picard/illumina/BasecallsConverterBuilder.html
/usr/share/doc/libpicard-java/api/picard/illumina/CheckIlluminaDirectory.html
/usr/share/doc/libpicard-java/api/picard/illumina/ClusterDataToSamConverter.html
/usr/share/doc/libpicard-java/api/picard/illumina/CollectIlluminaBasecallingMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/illumina/CollectIlluminaLaneMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/DistanceMetric.html
/usr/share/doc/libpicard-java/api/picard/illumina/ExtractBarcodesProgram.html
/usr/share/doc/libpicard-java/api/picard/illumina/ExtractIlluminaBarcodes.PerTileBarcodeExtractor.html
/usr/share/doc/libpicard-java/api/picard/illumina/ExtractIlluminaBarcodes.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaBasecallingMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaBasecallsToFastq.ReadNameFormat.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaBasecallsToFastq.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaBasecallsToSam.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaLaneMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/IlluminaPhasingMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/LanePhasingMetricsCollector.html
/usr/share/doc/libpicard-java/api/picard/illumina/MarkIlluminaAdapters.html
/usr/share/doc/libpicard-java/api/picard/illumina/SortedBasecallsConverter.html
/usr/share/doc/libpicard-java/api/picard/illumina/UnsortedBasecallsConverter.html
/usr/share/doc/libpicard-java/api/picard/illumina/package-summary.html
/usr/share/doc/libpicard-java/api/picard/illumina/package-tree.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/BaseIlluminaDataProvider.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/BclData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/CbclData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ClusterData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IlluminaDataProviderFactory.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IlluminaDataType.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IlluminaFileUtil.SupportedIlluminaFormat.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IlluminaFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IlluminaMetricsCode.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/IntensityChannel.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileBclFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileBclParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileFilterParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileLocsParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/MultiTileParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/OutputMapping.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ParameterizedFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/PerTileFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/PerTileOrPerRunFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/PerTileParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/PerTilePerCycleFileUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/PosParser.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/Range.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ReadData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ReadDescriptor.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ReadStructure.Substructure.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ReadStructure.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/ReadType.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/Tile.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/TileIndex.TileIndexRecord.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/TileIndex.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/TileMetricsUtil.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/TilePhasingValue.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/TileTemplateRead.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/BarcodeFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/BciFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/BclFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/BclIndexFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/ClocsFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/FileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/FilterFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/LocsFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/MultiTileBclFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/MultiTileLocsFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/PosFileFaker.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/package-summary.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/fakers/package-tree.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/package-summary.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/package-tree.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/AbstractIlluminaPositionFileReader.PositionInfo.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/AbstractIlluminaPositionFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BarcodeFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BaseBclReader.CycleData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BaseBclReader.TileData.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BaseBclReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BclIndexReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BclQualityEvaluationStrategy.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/BclReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/CbclReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/ClocsFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/EmpiricalPhasingMetricsOutReader.IlluminaPhasingMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/EmpiricalPhasingMetricsOutReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/FilterFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/LocsFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/MMapBackedIteratorFactory.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/PosFileReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/TileMetricsOutReader.IlluminaLaneTileCode.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/TileMetricsOutReader.IlluminaTileMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/TileMetricsOutReader.TileMetricsVersion.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/TileMetricsOutReader.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/package-summary.html
/usr/share/doc/libpicard-java/api/picard/illumina/parser/readers/package-tree.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/CollectHiSeqXPfFailMetrics.PFFailDetailedMetric.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/CollectHiSeqXPfFailMetrics.PFFailSummaryMetric.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/CollectHiSeqXPfFailMetrics.ReadClassifier.PfFailReason.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/CollectHiSeqXPfFailMetrics.ReadClassifier.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/CollectHiSeqXPfFailMetrics.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/package-summary.html
/usr/share/doc/libpicard-java/api/picard/illumina/quality/package-tree.html
/usr/share/doc/libpicard-java/api/picard/metrics/GcBiasMetrics.html
/usr/share/doc/libpicard-java/api/picard/metrics/MultiLevelCollector.html
/usr/share/doc/libpicard-java/api/picard/metrics/MultilevelMetrics.html
/usr/share/doc/libpicard-java/api/picard/metrics/PerUnitMetricCollector.html
/usr/share/doc/libpicard-java/api/picard/metrics/SAMRecordAndReference.html
/usr/share/doc/libpicard-java/api/picard/metrics/SAMRecordAndReferenceMultiLevelCollector.html
/usr/share/doc/libpicard-java/api/picard/metrics/SAMRecordMultiLevelCollector.html
/usr/share/doc/libpicard-java/api/picard/metrics/package-summary.html
/usr/share/doc/libpicard-java/api/picard/metrics/package-tree.html
/usr/share/doc/libpicard-java/api/picard/nio/GATKUtils.html
/usr/share/doc/libpicard-java/api/picard/nio/PathProvider.html
/usr/share/doc/libpicard-java/api/picard/nio/PicardBucketUtils.html
/usr/share/doc/libpicard-java/api/picard/nio/PicardHtsPath.html
/usr/share/doc/libpicard-java/api/picard/nio/PicardIOUtils.html
/usr/share/doc/libpicard-java/api/picard/nio/package-summary.html
/usr/share/doc/libpicard-java/api/picard/nio/package-tree.html
/usr/share/doc/libpicard-java/api/picard/package-summary.html
/usr/share/doc/libpicard-java/api/picard/package-tree.html
/usr/share/doc/libpicard-java/api/picard/pedigree/PedFile.PedTrio.html
/usr/share/doc/libpicard-java/api/picard/pedigree/PedFile.html
/usr/share/doc/libpicard-java/api/picard/pedigree/Sex.html
/usr/share/doc/libpicard-java/api/picard/pedigree/package-summary.html
/usr/share/doc/libpicard-java/api/picard/pedigree/package-tree.html
/usr/share/doc/libpicard-java/api/picard/reference/ExtractSequences.html
/usr/share/doc/libpicard-java/api/picard/reference/NonNFastaSize.html
/usr/share/doc/libpicard-java/api/picard/reference/NormalizeFasta.html
/usr/share/doc/libpicard-java/api/picard/reference/package-summary.html
/usr/share/doc/libpicard-java/api/picard/reference/package-tree.html
/usr/share/doc/libpicard-java/api/picard/sam/AbstractAlignmentMerger.UnmappingReadStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/AbstractAlignmentMerger.html
/usr/share/doc/libpicard-java/api/picard/sam/AddCommentsToBam.html
/usr/share/doc/libpicard-java/api/picard/sam/AddOATag.html
/usr/share/doc/libpicard-java/api/picard/sam/AddOrReplaceReadGroups.html
/usr/share/doc/libpicard-java/api/picard/sam/BamIndexStats.html
/usr/share/doc/libpicard-java/api/picard/sam/BestEndMapqPrimaryAlignmentStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/BestMapqPrimaryAlignmentSelectionStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/BuildBamIndex.html
/usr/share/doc/libpicard-java/api/picard/sam/CalculateReadGroupChecksum.html
/usr/share/doc/libpicard-java/api/picard/sam/CheckTerminatorBlock.html
/usr/share/doc/libpicard-java/api/picard/sam/CleanSam.html
/usr/share/doc/libpicard-java/api/picard/sam/CompareSAMs.html
/usr/share/doc/libpicard-java/api/picard/sam/CreateSequenceDictionary.CreateSeqDictReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/sam/CreateSequenceDictionary.html
/usr/share/doc/libpicard-java/api/picard/sam/DownsampleSam.html
/usr/share/doc/libpicard-java/api/picard/sam/DuplicationMetrics.html
/usr/share/doc/libpicard-java/api/picard/sam/DuplicationMetricsFactory.html
/usr/share/doc/libpicard-java/api/picard/sam/EarliestFragmentPrimaryAlignmentSelectionStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/FastqToSam.html
/usr/share/doc/libpicard-java/api/picard/sam/FilterSamReads.Filter.html
/usr/share/doc/libpicard-java/api/picard/sam/FilterSamReads.html
/usr/share/doc/libpicard-java/api/picard/sam/FixMateInformation.html
/usr/share/doc/libpicard-java/api/picard/sam/FlowBasedDuplicationMetrics.html
/usr/share/doc/libpicard-java/api/picard/sam/GatherBamFiles.html
/usr/share/doc/libpicard-java/api/picard/sam/MergeBamAlignment.html
/usr/share/doc/libpicard-java/api/picard/sam/MergeSamFiles.html
/usr/share/doc/libpicard-java/api/picard/sam/MostDistantPrimaryAlignmentSelectionStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/PositionBasedDownsampleSam.html
/usr/share/doc/libpicard-java/api/picard/sam/PrimaryAlignmentSelectionStrategy.html
/usr/share/doc/libpicard-java/api/picard/sam/ReorderSam.html
/usr/share/doc/libpicard-java/api/picard/sam/ReplaceSamHeader.html
/usr/share/doc/libpicard-java/api/picard/sam/RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile.html
/usr/share/doc/libpicard-java/api/picard/sam/RevertOriginalBaseQualitiesAndAddMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/RevertSam.FileType.html
/usr/share/doc/libpicard-java/api/picard/sam/RevertSam.html
/usr/share/doc/libpicard-java/api/picard/sam/SamAlignmentMerger.html
/usr/share/doc/libpicard-java/api/picard/sam/SamComparisonMetric.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/BaseCalculator.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/BaseErrorAggregation.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/BaseErrorCalculator.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/BaseErrorMetric.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/CollectSamErrorMetrics.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ErrorMetric.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/IndelErrorCalculator.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/IndelErrorMetric.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/OverlappingErrorMetric.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/OverlappingReadsErrorCalculator.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.BinnedReadCycleStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.CigarOperatorsInReadStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.CollectionStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.Consensus.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.ConsensusStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.CycleBin.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.FlowCellTileStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.FlowCellXStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.FlowCellYStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.GCContentStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.IndelLengthStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.IndelsInReadStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.LongShortHomopolymer.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.LongShortHomopolymerStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.MismatchesInReadStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.NsInReadStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.PairOrientation.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.PairStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.ProperPaired.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.ReadDirection.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.ReadOrdinality.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.RecordAndOffsetStratifier.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/ReadBaseStratification.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/SimpleErrorCalculator.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/package-summary.html
/usr/share/doc/libpicard-java/api/picard/sam/SamErrorMetric/package-tree.html
/usr/share/doc/libpicard-java/api/picard/sam/SamFormatConverter.html
/usr/share/doc/libpicard-java/api/picard/sam/SamToFastq.html
/usr/share/doc/libpicard-java/api/picard/sam/SamToFastqWithTags.html
/usr/share/doc/libpicard-java/api/picard/sam/SetNmAndUqTags.html
/usr/share/doc/libpicard-java/api/picard/sam/SetNmMdAndUqTags.html
/usr/share/doc/libpicard-java/api/picard/sam/SortSam.html
/usr/share/doc/libpicard-java/api/picard/sam/SplitSamByLibrary.html
/usr/share/doc/libpicard-java/api/picard/sam/SplitSamByNumberOfReads.html
/usr/share/doc/libpicard-java/api/picard/sam/ValidateSamFile.Mode.html
/usr/share/doc/libpicard-java/api/picard/sam/ValidateSamFile.html
/usr/share/doc/libpicard-java/api/picard/sam/ViewSam.AlignmentStatus.html
/usr/share/doc/libpicard-java/api/picard/sam/ViewSam.PfStatus.html
/usr/share/doc/libpicard-java/api/picard/sam/ViewSam.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/CheckDuplicateMarking.Mode.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/CheckDuplicateMarking.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/CollectDuplicateMetrics.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/EstimateLibraryComplexity.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicates.DuplicateTaggingPolicy.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicates.DuplicateType.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicates.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesForFlowArgumentCollection.FLOW_DUPLICATE_SELECTION_STRATEGY.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesForFlowArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesForFlowHelper.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesHelper.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesWithMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/MarkDuplicatesWithMateCigarIterator.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/UmiGraph.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/UmiMetrics.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/package-summary.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/package-tree.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/AbstractMarkDuplicatesCommandLineProgram.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/AbstractOpticalDuplicateFinderCommandLineProgram.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/DiskBasedReadEndsForMarkDuplicatesMap.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/LibraryIdGenerator.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/MarkQueue.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/MemoryBasedReadEndsForMarkDuplicatesMap.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/OpticalDuplicateFinder.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/PhysicalLocationForMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/PhysicalLocationForMateCigarSet.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEnds.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMarkDuplicates.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesCodec.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesMap.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesWithBarcodes.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMarkDuplicatesWithBarcodesCodec.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/ReadEndsForMateCigar.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/RepresentativeReadIndexerCodec.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/SamRecordWithOrdinalAndSetDuplicateReadFlag.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/package-summary.html
/usr/share/doc/libpicard-java/api/picard/sam/markduplicates/util/package-tree.html
/usr/share/doc/libpicard-java/api/picard/sam/package-summary.html
/usr/share/doc/libpicard-java/api/picard/sam/package-tree.html
/usr/share/doc/libpicard-java/api/picard/sam/util/PGTagArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/sam/util/Pair.html
/usr/share/doc/libpicard-java/api/picard/sam/util/PhysicalLocation.html
/usr/share/doc/libpicard-java/api/picard/sam/util/PhysicalLocationInt.html
/usr/share/doc/libpicard-java/api/picard/sam/util/PhysicalLocationShort.html
/usr/share/doc/libpicard-java/api/picard/sam/util/PrimaryAlignmentKey.html
/usr/share/doc/libpicard-java/api/picard/sam/util/ReadNameParser.html
/usr/share/doc/libpicard-java/api/picard/sam/util/RepresentativeReadIndexer.html
/usr/share/doc/libpicard-java/api/picard/sam/util/SAMComparisonArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/sam/util/SamComparison.AlignmentComparison.html
/usr/share/doc/libpicard-java/api/picard/sam/util/SamComparison.html
/usr/share/doc/libpicard-java/api/picard/sam/util/package-summary.html
/usr/share/doc/libpicard-java/api/picard/sam/util/package-tree.html
/usr/share/doc/libpicard-java/api/picard/util/AbstractInputParser.html
/usr/share/doc/libpicard-java/api/picard/util/AccumulateQualityYieldMetrics.html
/usr/share/doc/libpicard-java/api/picard/util/AdapterMarker.html
/usr/share/doc/libpicard-java/api/picard/util/AdapterPair.html
/usr/share/doc/libpicard-java/api/picard/util/AlleleSubsettingUtils.html
/usr/share/doc/libpicard-java/api/picard/util/AsyncIterator.html
/usr/share/doc/libpicard-java/api/picard/util/AtomicIterator.html
/usr/share/doc/libpicard-java/api/picard/util/BaitDesigner.DesignStrategy.html
/usr/share/doc/libpicard-java/api/picard/util/BaitDesigner.html
/usr/share/doc/libpicard-java/api/picard/util/BarcodeEditDistanceQuery.html
/usr/share/doc/libpicard-java/api/picard/util/BasicInputParser.html
/usr/share/doc/libpicard-java/api/picard/util/BedToIntervalList.html
/usr/share/doc/libpicard-java/api/picard/util/CircularByteBuffer.html
/usr/share/doc/libpicard-java/api/picard/util/ClippingUtility.html
/usr/share/doc/libpicard-java/api/picard/util/CsvInputParser.html
/usr/share/doc/libpicard-java/api/picard/util/DbSnpBitSetUtil.DbSnpBitSets.html
/usr/share/doc/libpicard-java/api/picard/util/DbSnpBitSetUtil.html
/usr/share/doc/libpicard-java/api/picard/util/DelimitedTextFileWithHeaderIterator.Row.html
/usr/share/doc/libpicard-java/api/picard/util/DelimitedTextFileWithHeaderIterator.html
/usr/share/doc/libpicard-java/api/picard/util/FifoBuffer.html
/usr/share/doc/libpicard-java/api/picard/util/GraphUtils.Graph.html
/usr/share/doc/libpicard-java/api/picard/util/GraphUtils.html
/usr/share/doc/libpicard-java/api/picard/util/IlluminaUtil.IlluminaAdapterPair.html
/usr/share/doc/libpicard-java/api/picard/util/IlluminaUtil.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScatter.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScatterMode.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScatterer.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererByBaseCount.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererByIntervalCount.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererByIntervalCountWithDistributedRemainder.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererWithSubdivision.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererWithoutSubdivision.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/IntervalListScattererWithoutSubdivisionWithOverflow.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/package-summary.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalList/package-tree.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalListToBed.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalListTools.Action.html
/usr/share/doc/libpicard-java/api/picard/util/IntervalListTools.html
/usr/share/doc/libpicard-java/api/picard/util/Iterators.html
/usr/share/doc/libpicard-java/api/picard/util/LiftOverIntervalList.html
/usr/share/doc/libpicard-java/api/picard/util/LiftoverUtils.html
/usr/share/doc/libpicard-java/api/picard/util/MathUtil.LogMath.html
/usr/share/doc/libpicard-java/api/picard/util/MathUtil.html
/usr/share/doc/libpicard-java/api/picard/util/PropertyUtils.html
/usr/share/doc/libpicard-java/api/picard/util/QuerySortedReadPairIteratorUtil.ReadPair.html
/usr/share/doc/libpicard-java/api/picard/util/QuerySortedReadPairIteratorUtil.html
/usr/share/doc/libpicard-java/api/picard/util/RExecutor.html
/usr/share/doc/libpicard-java/api/picard/util/ReflectionUtil.html
/usr/share/doc/libpicard-java/api/picard/util/ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection.html
/usr/share/doc/libpicard-java/api/picard/util/ScatterIntervalsByNs.html
/usr/share/doc/libpicard-java/api/picard/util/SequenceDictionaryUtils.SamSequenceRecordsIterator.html
/usr/share/doc/libpicard-java/api/picard/util/SequenceDictionaryUtils.html
/usr/share/doc/libpicard-java/api/picard/util/SeriesStats.html
/usr/share/doc/libpicard-java/api/picard/util/SingleBarcodeDistanceMetric.html
/usr/share/doc/libpicard-java/api/picard/util/TabbedInputParser.html
/usr/share/doc/libpicard-java/api/picard/util/TabbedTextFileWithHeaderParser.Row.html
/usr/share/doc/libpicard-java/api/picard/util/TabbedTextFileWithHeaderParser.html
/usr/share/doc/libpicard-java/api/picard/util/ThreadPoolExecutorUtil.html
/usr/share/doc/libpicard-java/api/picard/util/ThreadPoolExecutorWithExceptions.html
/usr/share/doc/libpicard-java/api/picard/util/UnsignedTypeUtil.html
/usr/share/doc/libpicard-java/api/picard/util/VariantType.html
/usr/share/doc/libpicard-java/api/picard/util/help/HelpConstants.html
/usr/share/doc/libpicard-java/api/picard/util/help/package-summary.html
/usr/share/doc/libpicard-java/api/picard/util/help/package-tree.html
/usr/share/doc/libpicard-java/api/picard/util/package-summary.html
/usr/share/doc/libpicard-java/api/picard/util/package-tree.html
/usr/share/doc/libpicard-java/api/picard/vcf/AccumulateVariantCallingMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/ByIntervalListVariantContextIterator.html
/usr/share/doc/libpicard-java/api/picard/vcf/CallingMetricAccumulator.Result.html
/usr/share/doc/libpicard-java/api/picard/vcf/CallingMetricAccumulator.html
/usr/share/doc/libpicard-java/api/picard/vcf/CollectVariantCallingMetrics.VariantCallingDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/CollectVariantCallingMetrics.VariantCallingSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/CollectVariantCallingMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/FixVcfHeader.html
/usr/share/doc/libpicard-java/api/picard/vcf/GA4GHScheme.html
/usr/share/doc/libpicard-java/api/picard/vcf/GA4GHSchemeWithMissingAsHomRef.html
/usr/share/doc/libpicard-java/api/picard/vcf/GatherVcfs.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordance.Alleles.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordance.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceContingencyMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceCounts.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceDetailMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceScheme.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceSchemeFactory.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStateCodes.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStates.CallState.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStates.ContingencyState.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStates.TruthAndCallStates.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStates.TruthState.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceStates.html
/usr/share/doc/libpicard-java/api/picard/vcf/GenotypeConcordanceSummaryMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/GvcfMetricAccumulator.html
/usr/share/doc/libpicard-java/api/picard/vcf/LiftoverVcf.html
/usr/share/doc/libpicard-java/api/picard/vcf/MakeSitesOnlyVcf.html
/usr/share/doc/libpicard-java/api/picard/vcf/MakeVcfSampleNameMap.html
/usr/share/doc/libpicard-java/api/picard/vcf/MendelianViolations/FindMendelianViolations.html
/usr/share/doc/libpicard-java/api/picard/vcf/MendelianViolations/MendelianViolationMetrics.html
/usr/share/doc/libpicard-java/api/picard/vcf/MendelianViolations/MendelianViolationsByFamily.html
/usr/share/doc/libpicard-java/api/picard/vcf/MendelianViolations/package-summary.html
/usr/share/doc/libpicard-java/api/picard/vcf/MendelianViolations/package-tree.html
/usr/share/doc/libpicard-java/api/picard/vcf/MergeVcfs.html
/usr/share/doc/libpicard-java/api/picard/vcf/PairedVariantSubContextIterator.VcfTuple.html
/usr/share/doc/libpicard-java/api/picard/vcf/PairedVariantSubContextIterator.html
/usr/share/doc/libpicard-java/api/picard/vcf/RenameSampleInVcf.html
/usr/share/doc/libpicard-java/api/picard/vcf/SortVcf.html
/usr/share/doc/libpicard-java/api/picard/vcf/SplitVcfs.html
/usr/share/doc/libpicard-java/api/picard/vcf/UpdateVcfSequenceDictionary.html
/usr/share/doc/libpicard-java/api/picard/vcf/VcfFormatConverter.html
/usr/share/doc/libpicard-java/api/picard/vcf/VcfToIntervalList.VARIANT_ID_TYPES.html
/usr/share/doc/libpicard-java/api/picard/vcf/VcfToIntervalList.html
/usr/share/doc/libpicard-java/api/picard/vcf/VcfUtils.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/AlleleBalanceFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/DepthFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/FilterApplyingVariantIterator.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/FilterVcf.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/FisherStrandFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/GenotypeFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/GenotypeQualityFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/QdFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/VariantFilter.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/package-summary.html
/usr/share/doc/libpicard-java/api/picard/vcf/filter/package-tree.html
/usr/share/doc/libpicard-java/api/picard/vcf/package-summary.html
/usr/share/doc/libpicard-java/api/picard/vcf/package-tree.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantAccumulatorExecutor.MultiThreadedChunkBased.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantAccumulatorExecutor.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantIteratorProducer.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantProcessor.Accumulator.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantProcessor.AccumulatorGenerator.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantProcessor.Builder.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantProcessor.ResultMerger.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VariantProcessor.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VcfFileSegment.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VcfFileSegmentGenerator.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VcfPathSegment.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/VcfPathSegmentGenerator.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/package-summary.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/package-tree.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/util/PredicateFilterDecoratingClosableIterator.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/util/package-summary.html
/usr/share/doc/libpicard-java/api/picard/vcf/processor/util/package-tree.html
/usr/share/doc/libpicard-java/api/resources/glass.png
/usr/share/doc/libpicard-java/api/resources/x.png
/usr/share/doc/libpicard-java/api/script-dir/jquery-3.7.1.min.js
/usr/share/doc/libpicard-java/api/script-dir/jquery-ui.min.css
/usr/share/doc/libpicard-java/api/script-dir/jquery-ui.min.js
/usr/share/doc/libpicard-java/api/script.js
/usr/share/doc/libpicard-java/api/search-page.js
/usr/share/doc/libpicard-java/api/search.html
/usr/share/doc/libpicard-java/api/search.js
/usr/share/doc/libpicard-java/api/serialized-form.html
/usr/share/doc/libpicard-java/api/stylesheet.css
/usr/share/doc/libpicard-java/api/tag-search-index.js
/usr/share/doc/libpicard-java/api/type-search-index.js
/usr/share/lintian/overrides/libpicard-java-doc