Package - ivar

Package:  ivar
apt-get install ivar
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/i/ivar/ivar_1.4.4+dfsg-1_amd64.deb (Size: 224.7KiB)

PropertyValue
Packageivar
Version1.4.4+dfsg-1
Installed-Size1532
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.0), libhts3t64 (>= 1.17), libstdc++6 (>= 13.1)
Recommendssamtools
Descriptionfunctions broadly useful for viral amplicon-based sequencing
Description-md50e23cb2ef34819e99960031f64b21c00
Homepagehttps://github.com/andersen-lab/ivar
Sectionscience
Priorityoptional
Filenamepool/main/i/ivar/ivar_1.4.4+dfsg-1_amd64.deb
Size230084
MD5sum2b91c9b6f0f78a3b5c49430736dbf7ef
SHA256939064dffa50eb471d4e4863678ade463d3ac61b7a873d8965dc0348885f661d

Files in package

  • /usr/bin/ivar
  • /usr/share/doc/ivar/COOKBOOK.md
  • /usr/share/doc/ivar/MANUAL.md.gz
  • /usr/share/doc/ivar/README
  • /usr/share/doc/ivar/README.md.gz
  • /usr/share/doc/ivar/README.test
  • /usr/share/doc/ivar/README.test_data
  • /usr/share/doc/ivar/changelog.Debian.gz
  • /usr/share/doc/ivar/copyright
  • /usr/share/doc/ivar/examples/data/db/test_ref.fa
  • /usr/share/doc/ivar/examples/data/db/test_ref.fa.fai
  • /usr/share/doc/ivar/examples/data/pair_info_2.tsv
  • /usr/share/doc/ivar/examples/data/pair_information.tsv
  • /usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam
  • /usr/share/doc/ivar/examples/data/primer_only/primer_edge_cases.bam.bai
  • /usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed
  • /usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.tsv
  • /usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair_trim.untrimmed.bam
  • /usr/share/doc/ivar/examples/data/test.bed
  • /usr/share/doc/ivar/examples/data/test.filtered.tsv
  • /usr/share/doc/ivar/examples/data/test.gap.fa
  • /usr/share/doc/ivar/examples/data/test.gap.qual.txt
  • /usr/share/doc/ivar/examples/data/test.gap.sorted.bam
  • /usr/share/doc/ivar/examples/data/test.gap.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/test.gap.sorted.mpileup
  • /usr/share/doc/ivar/examples/data/test.gff
  • /usr/share/doc/ivar/examples/data/test.indel.mpileup
  • /usr/share/doc/ivar/examples/data/test.indel.tsv
  • /usr/share/doc/ivar/examples/data/test.indel2.tsv
  • /usr/share/doc/ivar/examples/data/test.indel3.tsv
  • /usr/share/doc/ivar/examples/data/test.indel4.tsv
  • /usr/share/doc/ivar/examples/data/test.masked_primer_indices.txt
  • /usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam
  • /usr/share/doc/ivar/examples/data/test.sim.merged.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/test.sorted.bam
  • /usr/share/doc/ivar/examples/data/test.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/test.strand.pileup
  • /usr/share/doc/ivar/examples/data/test.trimmed.masked.bam
  • /usr/share/doc/ivar/examples/data/test.trimmed.masked.bam.bai
  • /usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam
  • /usr/share/doc/ivar/examples/data/test.trimmed.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam
  • /usr/share/doc/ivar/examples/data/test.unmapped.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/test_amplicon.sorted.bam
  • /usr/share/doc/ivar/examples/data/test_isize.bed
  • /usr/share/doc/ivar/examples/data/test_isize.sorted.bam
  • /usr/share/doc/ivar/examples/data/test_merged.bed
  • /usr/share/doc/ivar/examples/data/test_strand.gff
  • /usr/share/doc/ivar/examples/data/test_strand.tsv
  • /usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam
  • /usr/share/doc/ivar/examples/data/test_unpaired.sorted.bam.bai
  • /usr/share/doc/ivar/examples/data/trim_isize.bam
  • /usr/share/doc/ivar/examples/ref/README.test_data
  • /usr/share/doc/ivar/examples/ref/out-consensus.fa
  • /usr/share/doc/ivar/examples/ref/out-consensus.qual.txt
  • /usr/share/doc/ivar/examples/ref/out-filtered.tsv
  • /usr/share/doc/ivar/examples/ref/out-getmasked.txt
  • /usr/share/doc/ivar/examples/ref/out-removereads.sam
  • /usr/share/doc/ivar/examples/ref/out-trim.sam
  • /usr/share/doc/ivar/examples/ref/out-trim2.sam
  • /usr/share/doc/ivar/examples/ref/out-variants.tsv
  • /usr/share/doc/ivar/run-unit-test
  • /usr/share/man/man1/ivar.1.gz