Package - iva

Package: iva
apt-get install iva

Manuals in package:

Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/i/iva/iva_1.0.11+ds-6_amd64.deb (Size: 8.2MiB)

Property	Value
Package	iva
Version	1.0.11+ds-6
Installed-Size	8770
Maintainer	Debian Med Packaging Team
Architecture	amd64
Depends	fastaq, python3-networkx, python3-packaging, python3-pysam, python3:any, perl:any, kmc, mummer, smalt, samtools, python3-numpy, default-jre-headless
Recommends	r-base-core, bioperl, trimmomatic
Description	iterative virus sequence assembler
Description-md5	698e26411c0dbe5917f816e7b7229be9
Homepage	https://github.com/sanger-pathogens/iva
Tag	biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::python, interface::commandline, role::program, works-with::biological-sequence, works-with::file
Section	science
Priority	optional
Filename	pool/main/i/iva/iva_1.0.11+ds-6_amd64.deb
Size	8581812
MD5sum	3bb224aeb71839351829ccb0174f884c
SHA256	dfc79c21433530b4e62523cb0e4ac77efd6c8f4ac8d4ba907fdc08875f8cfd93

Files in package

/usr/bin/iva
/usr/bin/iva_qc
/usr/bin/iva_qc_make_db
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt
/usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt
/usr/lib/python3/dist-packages/iva/__init__.py
/usr/lib/python3/dist-packages/iva/assembly.py
/usr/lib/python3/dist-packages/iva/common.py
/usr/lib/python3/dist-packages/iva/contig.py
/usr/lib/python3/dist-packages/iva/contig_trim.py
/usr/lib/python3/dist-packages/iva/edge.py
/usr/lib/python3/dist-packages/iva/egg_extract.py
/usr/lib/python3/dist-packages/iva/external_progs.py
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
/usr/lib/python3/dist-packages/iva/gage/GetFastaStats.java
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
/usr/lib/python3/dist-packages/iva/gage/SizeFasta.java
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
/usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.java
/usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
/usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
/usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
/usr/lib/python3/dist-packages/iva/gage/Utils.class
/usr/lib/python3/dist-packages/iva/gage/Utils.java
/usr/lib/python3/dist-packages/iva/gage/colsum.pl
/usr/lib/python3/dist-packages/iva/gage/getCorrectnessStats.sh
/usr/lib/python3/dist-packages/iva/gage/getMummerStats.sh
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class
/usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.java
/usr/lib/python3/dist-packages/iva/graph.py
/usr/lib/python3/dist-packages/iva/kcount.py
/usr/lib/python3/dist-packages/iva/kmers.py
/usr/lib/python3/dist-packages/iva/kraken.py
/usr/lib/python3/dist-packages/iva/mapping.py
/usr/lib/python3/dist-packages/iva/mummer.py
/usr/lib/python3/dist-packages/iva/qc.py
/usr/lib/python3/dist-packages/iva/qc_external.py
/usr/lib/python3/dist-packages/iva/ratt/embl2gff.pl
/usr/lib/python3/dist-packages/iva/ratt/genbank2embl.pl
/usr/lib/python3/dist-packages/iva/ratt/main.ratt.pl
/usr/lib/python3/dist-packages/iva/ratt/ratt.config
/usr/lib/python3/dist-packages/iva/ratt/ratt.config.hiv
/usr/lib/python3/dist-packages/iva/ratt/ratt_correction.pm
/usr/lib/python3/dist-packages/iva/ratt/start.ratt.sh
/usr/lib/python3/dist-packages/iva/read_trim.py
/usr/lib/python3/dist-packages/iva/read_trim/adapters.fasta
/usr/lib/python3/dist-packages/iva/seed.py
/usr/lib/python3/dist-packages/iva/seed_processor.py
/usr/lib/python3/dist-packages/iva/test_data_runner.py
/usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta
/usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta
/usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz
/usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz
/usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta
/usr/share/doc/iva/changelog.Debian.gz
/usr/share/doc/iva/changelog.gz
/usr/share/doc/iva/copyright
/usr/share/man/man1/iva.1.gz
/usr/share/man/man1/iva_qc.1.gz
/usr/share/man/man1/iva_qc_make_db.1.gz