Package - hisat2

Package:  hisat2
apt-get install hisat2
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/h/hisat2/hisat2_2.2.1-5+b3_amd64.deb (Size: 3.6MiB)

PropertyValue
Packagehisat2
Sourcehisat2 (2.2.1-5)
Version2.2.1-5+b3
Installed-Size14679
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), perl:any, python3
Recommendspython3-hisat2, bcftools, samtools
Descriptiongraph-based alignment of short nucleotide reads to many genomes
Description-md55f7b7bae1f6d1899a67fb91260ec0d0f
Homepagehttps://daehwankimlab.github.io/hisat2/
Built-Usingsimde (= 0.8.2-3)
Sectionscience
Priorityoptional
Filenamepool/main/h/hisat2/hisat2_2.2.1-5+b3_amd64.deb
Size3796504
MD5sumd7a917af72ffc87c8a5cf9c86de08bb4
SHA256b189128b4c06a720a3553383dc979230e61fe191ed853be0252641e37ef0e0d6

Files in package

  • /usr/bin/hisat2
  • /usr/bin/hisat2-align-l
  • /usr/bin/hisat2-align-s
  • /usr/bin/hisat2-build
  • /usr/bin/hisat2-build-l
  • /usr/bin/hisat2-build-s
  • /usr/bin/hisat2-inspect
  • /usr/bin/hisat2-inspect-l
  • /usr/bin/hisat2-inspect-s
  • /usr/share/doc/hisat2/MANUAL.gz
  • /usr/share/doc/hisat2/changelog.Debian.amd64.gz
  • /usr/share/doc/hisat2/changelog.Debian.gz
  • /usr/share/doc/hisat2/copyright
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.1.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.2.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.3.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.4.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.5.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.6.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.7.ht2
  • /usr/share/doc/hisat2/examples/index/22_20-21M_snp.8.ht2
  • /usr/share/doc/hisat2/examples/reads/reads_1.fa
  • /usr/share/doc/hisat2/examples/reads/reads_2.fa
  • /usr/share/doc/hisat2/examples/reference/22_20-21M.fa
  • /usr/share/doc/hisat2/examples/reference/22_20-21M.snp
  • /usr/share/man/man1/hisat2-align-l.1.gz
  • /usr/share/man/man1/hisat2-align-s.1.gz
  • /usr/share/man/man1/hisat2-build-l.1.gz
  • /usr/share/man/man1/hisat2-build-s.1.gz
  • /usr/share/man/man1/hisat2-build.1.gz
  • /usr/share/man/man1/hisat2-inspect-l.1.gz
  • /usr/share/man/man1/hisat2-inspect-s.1.gz
  • /usr/share/man/man1/hisat2-inspect.1.gz
  • /usr/share/man/man1/hisat2.1.gz