Package - gubbins

Package:  gubbins
apt-get install gubbins
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/g/gubbins/gubbins_3.4-2_amd64.deb (Size: 93.0KiB)

PropertyValue
Packagegubbins
Version3.4-2
Installed-Size483
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.34), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy, python3-multiprocess, python3-numpy, python3-scipy, python3:any, python3, python3-pkg-resources, raxml
Recommendsiqtree, fasttree
Suggestsr-base-core
Descriptionphylogenetic analysis of genome sequences
Description-md5cc258d495d1b902fa507e53b5cc3902e
Homepagehttps://sanger-pathogens.github.io/gubbins/
Sectionscience
Priorityoptional
Filenamepool/main/g/gubbins/gubbins_3.4-2_amd64.deb
Size95224
MD5sum762c67b076ddf6235a890cc9237ce56c
SHA2565ee9fe0f7827ae29857251707e866f5a48fab4db3e1d21a26bbc8624053c18da

Files in package

  • /usr/bin/run_gubbins
  • /usr/lib/gubbins/gubbins
  • /usr/lib/x86_64-linux-gnu/libgubbins.so
  • /usr/lib/x86_64-linux-gnu/libgubbins.so.0
  • /usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1
  • /usr/share/doc/gubbins/changelog.Debian.gz
  • /usr/share/doc/gubbins/changelog.gz
  • /usr/share/doc/gubbins/copyright
  • /usr/share/gubbins/count_recombinations_per_gene.py
  • /usr/share/gubbins/extract_gubbins_clade.py
  • /usr/share/gubbins/extract_recombinant_sequences.py
  • /usr/share/gubbins/generate_files_for_clade_analysis.py
  • /usr/share/gubbins/generate_ska_alignment.py
  • /usr/share/gubbins/gubbins-3.4.egg-info/PKG-INFO
  • /usr/share/gubbins/gubbins-3.4.egg-info/dependency_links.txt
  • /usr/share/gubbins/gubbins-3.4.egg-info/entry_points.txt
  • /usr/share/gubbins/gubbins-3.4.egg-info/requires.txt
  • /usr/share/gubbins/gubbins-3.4.egg-info/top_level.txt
  • /usr/share/gubbins/gubbins/PreProcessFasta.py
  • /usr/share/gubbins/gubbins/ValidateFastaAlignment.py
  • /usr/share/gubbins/gubbins/__init__.py
  • /usr/share/gubbins/gubbins/common.py
  • /usr/share/gubbins/gubbins/pyjar.py
  • /usr/share/gubbins/gubbins/run_gubbins.py
  • /usr/share/gubbins/gubbins/tests/__init__.py
  • /usr/share/gubbins/gubbins/tests/test_alignment_python_methods.py
  • /usr/share/gubbins/gubbins/tests/test_converging_recombinations.py
  • /usr/share/gubbins/gubbins/tests/test_dependencies.py
  • /usr/share/gubbins/gubbins/tests/test_pre_process_fasta.py
  • /usr/share/gubbins/gubbins/tests/test_python_scripts.py
  • /usr/share/gubbins/gubbins/tests/test_tree_methods.py
  • /usr/share/gubbins/gubbins/tests/test_treebuilders.py
  • /usr/share/gubbins/gubbins/tests/test_utils.py
  • /usr/share/gubbins/gubbins/tests/test_validate_fasta_input.py
  • /usr/share/gubbins/gubbins/tests/test_validate_starting_tree.py
  • /usr/share/gubbins/gubbins/treebuilders.py
  • /usr/share/gubbins/gubbins/utils.py
  • /usr/share/gubbins/gubbins_alignment_checker.py
  • /usr/share/gubbins/mask_gubbins_aln.py
  • /usr/share/gubbins/plot_gubbins.R
  • /usr/share/gubbins/run_gubbins.py
  • /usr/share/lintian/overrides/gubbins
  • /usr/share/man/man1/run_gubbins.1.gz
  • /usr/share/python3/runtime.d/gubbins.rtupdate