Package - freebayes
Primary informations
Download package: http://deb.debian.org/debian/pool/main/f/freebayes/freebayes_1.3.9-1_amd64.deb (Size: 1.5MiB)| Property | Value |
|---|---|
| Package | freebayes |
| Version | 1.3.9-1 |
| Installed-Size | 4126 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Depends | libc6 (>= 2.38), libgcc-s1 (>= 3.0), libseqlib2 (>= 1.2.0), libstdc++6 (>= 13.1), libtabixpp0t64 (>= 1.0.0), libvcflib2 (>= 1.0.12+dfsg), zlib1g (>= 1:1.1.4), python3 |
| Recommends | parallel |
| Description | Bayesian haplotype-based polymorphism discovery and genotyping |
| Description-md5 | b7e8ee9cfe0c2093be3d78a8098290de |
| Homepage | https://github.com/ekg/freebayes |
| Section | science |
| Priority | optional |
| Filename | pool/main/f/freebayes/freebayes_1.3.9-1_amd64.deb |
| Size | 1523260 |
| MD5sum | 1a50c1c49fb86fea2f2093fc47d4bcbd |
| SHA256 | f67b2fb1950ec9a48aec3a65f18c396124a02f0b0439a29a1b15585bf9d87a6b |
Files in package
- /usr/bin/bamleftalign
- /usr/bin/freebayes
- /usr/share/doc/freebayes/README.md.gz
- /usr/share/doc/freebayes/README.test
- /usr/share/doc/freebayes/README.test_data
- /usr/share/doc/freebayes/RELEASE-NOTES.md.gz
- /usr/share/doc/freebayes/changelog.Debian.gz
- /usr/share/doc/freebayes/copyright
- /usr/share/doc/freebayes/examples/README.test_data
- /usr/share/doc/freebayes/examples/data/targets.bed
- /usr/share/doc/freebayes/examples/data/test.alt
- /usr/share/doc/freebayes/examples/data/test.bam
- /usr/share/doc/freebayes/examples/data/test.bam.bai
- /usr/share/doc/freebayes/examples/data/test.bed
- /usr/share/doc/freebayes/examples/data/test.ref
- /usr/share/doc/freebayes/examples/data/test.ref.fai
- /usr/share/doc/freebayes/examples/data/test.vcf
- /usr/share/doc/freebayes/examples/freebayes-env.yaml
- /usr/share/doc/freebayes/examples/performance/benchmark.md
- /usr/share/doc/freebayes/examples/pipeline.sh
- /usr/share/doc/freebayes/examples/regression/NA12878.chr22.tiny.vcf
- /usr/share/doc/freebayes/examples/regression/README.md
- /usr/share/doc/freebayes/examples/runner.sh
- /usr/share/doc/freebayes/examples/snakemake-freebayes-parallel.smk
- /usr/share/doc/freebayes/examples/splice/1:883884-887618.bam
- /usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai
- /usr/share/doc/freebayes/examples/splice/1:883884-887618.fa
- /usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai
- /usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t
- /usr/share/doc/freebayes/examples/t/01_call_variants.t
- /usr/share/doc/freebayes/examples/t/01b_call_variants.t
- /usr/share/doc/freebayes/examples/t/02_multi_bam.t
- /usr/share/doc/freebayes/examples/t/03_reference_bases.t
- /usr/share/doc/freebayes/examples/targets.bed
- /usr/share/doc/freebayes/examples/test.alt
- /usr/share/doc/freebayes/examples/test.bam
- /usr/share/doc/freebayes/examples/test.bam.bai
- /usr/share/doc/freebayes/examples/test.bed
- /usr/share/doc/freebayes/examples/test.ref
- /usr/share/doc/freebayes/examples/test.ref.fai
- /usr/share/doc/freebayes/examples/test.vcf
- /usr/share/doc/freebayes/examples/tiny/1read.bam
- /usr/share/doc/freebayes/examples/tiny/1read.bam.bai
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam
- /usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai
- /usr/share/doc/freebayes/examples/tiny/hla.fa
- /usr/share/doc/freebayes/examples/tiny/hla.fa.fai
- /usr/share/doc/freebayes/examples/tiny/hla.vcf.gz
- /usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi
- /usr/share/doc/freebayes/examples/tiny/q
- /usr/share/doc/freebayes/examples/tiny/q
- /usr/share/doc/freebayes/examples/tiny/q
- /usr/share/doc/freebayes/examples/tiny/q.fa
- /usr/share/doc/freebayes/examples/tiny/q.fa.fai
- /usr/share/doc/freebayes/examples/tiny/q.regions
- /usr/share/doc/freebayes/examples/tiny/q.vcf.gz
- /usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi
- /usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz
- /usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi
- /usr/share/doc/freebayes/run-unit-test.gz
- /usr/share/freebayes/scripts/GenerateFreebayesRegions.R
- /usr/share/freebayes/scripts/bgziptabix
- /usr/share/freebayes/scripts/coverage_to_regions.py
- /usr/share/freebayes/scripts/fasta_generate_regions.py
- /usr/share/freebayes/scripts/freebayes-parallel
- /usr/share/freebayes/scripts/generate_freebayes_region_scripts.sh
- /usr/share/freebayes/scripts/sam_add_rg.pl
- /usr/share/freebayes/scripts/samples.cnv
- /usr/share/freebayes/scripts/split_ref_by_bai_datasize.py
- /usr/share/freebayes/scripts/update_version.sh
- /usr/share/freebayes/scripts/vcffirstheader