Package - flye

Package:  flye
apt-get install flye
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/f/flye/flye_2.9.5+dfsg-1_amd64.deb (Size: 22.1MiB)

PropertyValue
Packageflye
Version2.9.5+dfsg-1
Installed-Size36930
MaintainerDebian Med Packaging Team
Architectureamd64
Dependslibc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 14), zlib1g (>= 1:1.1.4), python3:any, python3-six, minimap2, samtools
Descriptionde novo assembler for single molecule sequencing reads using repeat graphs
Description-md53db7e270dab8950024fe6cdcafb3a3bb
Homepagehttps://github.com/fenderglass/Flye
Sectionscience
Priorityoptional
Filenamepool/main/f/flye/flye_2.9.5+dfsg-1_amd64.deb
Size23200568
MD5sum0b0758aed136d7ff69adcf04309e5c9b
SHA2564dea545babb492c15c512ea09248ee18fd72b4d9fed87d759c4711db6ebe6dbe

Files in package

  • /usr/bin/flye
  • /usr/bin/flye-modules
  • /usr/lib/python3/dist-packages/flye-2.9.5.egg-info/PKG-INFO
  • /usr/lib/python3/dist-packages/flye-2.9.5.egg-info/dependency_links.txt
  • /usr/lib/python3/dist-packages/flye-2.9.5.egg-info/entry_points.txt
  • /usr/lib/python3/dist-packages/flye-2.9.5.egg-info/top_level.txt
  • /usr/lib/python3/dist-packages/flye/__build__.py
  • /usr/lib/python3/dist-packages/flye/__init__.py
  • /usr/lib/python3/dist-packages/flye/__version__.py
  • /usr/lib/python3/dist-packages/flye/assembly/__init__.py
  • /usr/lib/python3/dist-packages/flye/assembly/assemble.py
  • /usr/lib/python3/dist-packages/flye/assembly/repeat_graph.py
  • /usr/lib/python3/dist-packages/flye/assembly/scaffolder.py
  • /usr/lib/python3/dist-packages/flye/config/__init__.py
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_corrected_reads.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_defaults.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_hifi.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_nano_hq.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_raw_reads.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_subasm.cfg
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_substitutions.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_homopolymers.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_substitutions.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_substitutions.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_homopolymers.mat
  • /usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_substitutions.mat
  • /usr/lib/python3/dist-packages/flye/config/configurator.py
  • /usr/lib/python3/dist-packages/flye/config/py_cfg.py
  • /usr/lib/python3/dist-packages/flye/main.py
  • /usr/lib/python3/dist-packages/flye/polishing/__init__.py
  • /usr/lib/python3/dist-packages/flye/polishing/alignment.py
  • /usr/lib/python3/dist-packages/flye/polishing/bubbles.py
  • /usr/lib/python3/dist-packages/flye/polishing/consensus.py
  • /usr/lib/python3/dist-packages/flye/polishing/polish.py
  • /usr/lib/python3/dist-packages/flye/repeat_graph/__init__.py
  • /usr/lib/python3/dist-packages/flye/repeat_graph/graph_alignment.py
  • /usr/lib/python3/dist-packages/flye/repeat_graph/repeat_graph.py
  • /usr/lib/python3/dist-packages/flye/short_plasmids/__init__.py
  • /usr/lib/python3/dist-packages/flye/short_plasmids/circular_sequences.py
  • /usr/lib/python3/dist-packages/flye/short_plasmids/plasmids.py
  • /usr/lib/python3/dist-packages/flye/short_plasmids/unmapped_reads.py
  • /usr/lib/python3/dist-packages/flye/short_plasmids/utils.py
  • /usr/lib/python3/dist-packages/flye/tests/__init__.py
  • /usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb.fasta
  • /usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads.fastq.gz
  • /usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz
  • /usr/lib/python3/dist-packages/flye/tests/test_toy.py
  • /usr/lib/python3/dist-packages/flye/trestle/__init__.py
  • /usr/lib/python3/dist-packages/flye/trestle/divergence.py
  • /usr/lib/python3/dist-packages/flye/trestle/graph_resolver.py
  • /usr/lib/python3/dist-packages/flye/trestle/trestle.py
  • /usr/lib/python3/dist-packages/flye/trestle/trestle_config.py
  • /usr/lib/python3/dist-packages/flye/utils/__init__.py
  • /usr/lib/python3/dist-packages/flye/utils/bytes2human.py
  • /usr/lib/python3/dist-packages/flye/utils/fasta_parser.py
  • /usr/lib/python3/dist-packages/flye/utils/sam_parser.py
  • /usr/lib/python3/dist-packages/flye/utils/utils.py
  • /usr/share/doc/flye/FAQ.md.gz
  • /usr/share/doc/flye/README.md.gz
  • /usr/share/doc/flye/USAGE.md.gz
  • /usr/share/doc/flye/changelog.Debian.gz
  • /usr/share/doc/flye/changelog.gz
  • /usr/share/doc/flye/copyright
  • /usr/share/doc/flye/graph_example.png
  • /usr/share/man/man1/flye-modules.1.gz
  • /usr/share/man/man1/flye.1.gz