Package - bedtools-test

Package: bedtools-test
apt-get install bedtools-test

Documentations in package:

bedtools-test

Primary informations

Download package: http://deb.debian.org/debian/pool/main/b/bedtools/bedtools-test_2.31.1+dfsg-2_all.deb (Size: 10.4MiB)

Property	Value
Package	bedtools-test
Source	bedtools
Version	2.31.1+dfsg-2
Installed-Size	46836
Maintainer	Debian Med Packaging Team
Architecture	all
Depends	python3
Suggests	bedtools
Description	test data for the bedtools package
Description-md5	f7cded48ccb331508c65c4ef95728f52
Multi-Arch	foreign
Homepage	https://github.com/arq5x/bedtools2
Section	science
Priority	optional
Filename	pool/main/b/bedtools/bedtools-test_2.31.1+dfsg-2_all.deb
Size	10906008
MD5sum	410784eefa32609e83db555a681f54d5
SHA256	b28880d1a7d96ca7ffccfff55151f31942aee6b3775675ae6927813afced476b

Files in package

/usr/share/bedtools/data/aluY.chr1.bed.gz
/usr/share/bedtools/data/gerp.chr1.bed.gz
/usr/share/bedtools/data/knownGene.hg18.chr21.bed
/usr/share/bedtools/data/knownGene.hg18.chr21.short.bed
/usr/share/bedtools/data/refseq.chr1.exons.bed.gz
/usr/share/bedtools/data/simpleRepeats.chr1.bed.gz
/usr/share/bedtools/test/bamtobed/extra-long-header.sam.gz
/usr/share/bedtools/test/bamtobed/numeric_tag.sam
/usr/share/bedtools/test/bamtobed/one_block.sam
/usr/share/bedtools/test/bamtobed/test-bamtobed.sh
/usr/share/bedtools/test/bamtobed/three_blocks.sam
/usr/share/bedtools/test/bamtobed/two_blocks.sam
/usr/share/bedtools/test/bamtobed/two_blocks_w_D.sam
/usr/share/bedtools/test/bamtofastq/golden.fq
/usr/share/bedtools/test/bamtofastq/golden.fq2
/usr/share/bedtools/test/bamtofastq/test-bamtofastq.sh
/usr/share/bedtools/test/bamtofastq/test.sam
/usr/share/bedtools/test/bamtofastq/test2.sam
/usr/share/bedtools/test/bed12tobed6/bed6.bed
/usr/share/bedtools/test/bed12tobed6/one_blocks.bed
/usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
/usr/share/bedtools/test/bed12tobed6/three_blocks.bed
/usr/share/bedtools/test/bed12tobed6/two_blocks.bed
/usr/share/bedtools/test/bedtobam/chrsize.tmp
/usr/share/bedtools/test/bedtobam/test-bedtobam.sh
/usr/share/bedtools/test/bigchroms/abig.bed
/usr/share/bedtools/test/bigchroms/big4.bed
/usr/share/bedtools/test/bigchroms/big4c.bed
/usr/share/bedtools/test/bigchroms/bigx.bed
/usr/share/bedtools/test/bigchroms/make-big-chrom.py
/usr/share/bedtools/test/bigchroms/test-bigchroms.sh
/usr/share/bedtools/test/closest/a.bed
/usr/share/bedtools/test/closest/a.names.bed
/usr/share/bedtools/test/closest/a2.bed
/usr/share/bedtools/test/closest/b-one-bp-closer.bed
/usr/share/bedtools/test/closest/b.bed
/usr/share/bedtools/test/closest/b.names.bed
/usr/share/bedtools/test/closest/b2.bed
/usr/share/bedtools/test/closest/bug157_a.bed
/usr/share/bedtools/test/closest/bug157_b.bed
/usr/share/bedtools/test/closest/bug281_a.flip.medium.bed
/usr/share/bedtools/test/closest/bug281_a.medium.bed
/usr/share/bedtools/test/closest/bug281_b.bed
/usr/share/bedtools/test/closest/bug281_b.flip.bed
/usr/share/bedtools/test/closest/close-a.bed
/usr/share/bedtools/test/closest/close-b.bed
/usr/share/bedtools/test/closest/d.bed
/usr/share/bedtools/test/closest/d4.bed
/usr/share/bedtools/test/closest/d_d1F.bed
/usr/share/bedtools/test/closest/d_d1R.bed
/usr/share/bedtools/test/closest/d_d2F.bed
/usr/share/bedtools/test/closest/d_d2R.bed
/usr/share/bedtools/test/closest/d_id.bed
/usr/share/bedtools/test/closest/d_iu.bed
/usr/share/bedtools/test/closest/d_q1.bed
/usr/share/bedtools/test/closest/d_q2.bed
/usr/share/bedtools/test/closest/dmr.bed
/usr/share/bedtools/test/closest/islands.2.bed
/usr/share/bedtools/test/closest/islands.bed
/usr/share/bedtools/test/closest/kclosest/bug471_a.bed
/usr/share/bedtools/test/closest/kclosest/bug471_b.bed
/usr/share/bedtools/test/closest/kclosest/d1.bed
/usr/share/bedtools/test/closest/kclosest/d2.bed
/usr/share/bedtools/test/closest/kclosest/d3.bed
/usr/share/bedtools/test/closest/kclosest/q1.bed
/usr/share/bedtools/test/closest/kclosest/q2.bed
/usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
/usr/share/bedtools/test/closest/mdb1.bed
/usr/share/bedtools/test/closest/mdb2.bed
/usr/share/bedtools/test/closest/mdb3.bed
/usr/share/bedtools/test/closest/mq1.bed
/usr/share/bedtools/test/closest/null_a.bed
/usr/share/bedtools/test/closest/null_b.bed
/usr/share/bedtools/test/closest/null_c.bed
/usr/share/bedtools/test/closest/shores.bed
/usr/share/bedtools/test/closest/sortAndNaming/alpha_all.bed
/usr/share/bedtools/test/closest/sortAndNaming/alpha_missing.bed
/usr/share/bedtools/test/closest/sortAndNaming/db1_gls.bed
/usr/share/bedtools/test/closest/sortAndNaming/db1_leadingZero.txt
/usr/share/bedtools/test/closest/sortAndNaming/db1_noChr.bed
/usr/share/bedtools/test/closest/sortAndNaming/db1_num.bed
/usr/share/bedtools/test/closest/sortAndNaming/db2_num.bed
/usr/share/bedtools/test/closest/sortAndNaming/db2_numBackwards.bed
/usr/share/bedtools/test/closest/sortAndNaming/db3_numBackwards.bed
/usr/share/bedtools/test/closest/sortAndNaming/num_all.bed
/usr/share/bedtools/test/closest/sortAndNaming/num_missing.bed
/usr/share/bedtools/test/closest/sortAndNaming/q1_gls.bed
/usr/share/bedtools/test/closest/sortAndNaming/q1_num.bed
/usr/share/bedtools/test/closest/sortAndNaming/q1a_num.bed
/usr/share/bedtools/test/closest/sortAndNaming/sdb1.bed
/usr/share/bedtools/test/closest/sortAndNaming/sq1.bed
/usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
/usr/share/bedtools/test/closest/strand-test-a.bed
/usr/share/bedtools/test/closest/strand-test-b.bed
/usr/share/bedtools/test/closest/strand-test-c.bed
/usr/share/bedtools/test/closest/strand-test-d.bed
/usr/share/bedtools/test/closest/test-closest.sh
/usr/share/bedtools/test/closest/tfbs.bed
/usr/share/bedtools/test/cluster/in.bed
/usr/share/bedtools/test/cluster/test-cluster.sh
/usr/share/bedtools/test/complement/issue_503.bed
/usr/share/bedtools/test/complement/issue_503.genome
/usr/share/bedtools/test/complement/test-complement.sh
/usr/share/bedtools/test/coverage/a.bed
/usr/share/bedtools/test/coverage/b.bed
/usr/share/bedtools/test/coverage/c.bed
/usr/share/bedtools/test/coverage/chr_0-100.bed
/usr/share/bedtools/test/coverage/one_block.bam.bai
/usr/share/bedtools/test/coverage/one_block.sam
/usr/share/bedtools/test/coverage/sam-w-del.bam.bai
/usr/share/bedtools/test/coverage/sam-w-del.sam
/usr/share/bedtools/test/coverage/test-coverage.sh
/usr/share/bedtools/test/coverage/three_blocks.bam.bai
/usr/share/bedtools/test/coverage/three_blocks.sam
/usr/share/bedtools/test/coverage/three_blocks_match.bam
/usr/share/bedtools/test/coverage/three_blocks_match.bed
/usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
/usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
/usr/share/bedtools/test/coverage/two_blocks.bam.bai
/usr/share/bedtools/test/coverage/two_blocks.sam
/usr/share/bedtools/test/coverage/x.bed
/usr/share/bedtools/test/coverage/y.bed
/usr/share/bedtools/test/expand/expand.txt
/usr/share/bedtools/test/expand/test-expand.sh
/usr/share/bedtools/test/fisher/README.md
/usr/share/bedtools/test/fisher/a.bed
/usr/share/bedtools/test/fisher/a_merge.bed
/usr/share/bedtools/test/fisher/b.bed
/usr/share/bedtools/test/fisher/cmp.sh
/usr/share/bedtools/test/fisher/dm6.fai
/usr/share/bedtools/test/fisher/get.sh
/usr/share/bedtools/test/fisher/issue954.genome
/usr/share/bedtools/test/fisher/issue954_a.bed
/usr/share/bedtools/test/fisher/issue954_b.bed
/usr/share/bedtools/test/fisher/plot.py
/usr/share/bedtools/test/fisher/shuf.sh
/usr/share/bedtools/test/fisher/sim.py
/usr/share/bedtools/test/fisher/t.500.genome
/usr/share/bedtools/test/fisher/t.60.genome
/usr/share/bedtools/test/fisher/test-fisher.sh
/usr/share/bedtools/test/fisher/test.bed
/usr/share/bedtools/test/fisher/tumor.gff
/usr/share/bedtools/test/flank/a.bed
/usr/share/bedtools/test/flank/test-flank.sh
/usr/share/bedtools/test/flank/tiny.genome
/usr/share/bedtools/test/general/a.chromheader.bed
/usr/share/bedtools/test/general/a.trackheader.bed
/usr/share/bedtools/test/general/empty.bed
/usr/share/bedtools/test/general/hg19.fa.fai
/usr/share/bedtools/test/general/non-empty.bed.gz
/usr/share/bedtools/test/general/t.bed
/usr/share/bedtools/test/general/test-general.sh
/usr/share/bedtools/test/genomecov/chip.sam
/usr/share/bedtools/test/genomecov/empty.bam
/usr/share/bedtools/test/genomecov/empty.cram
/usr/share/bedtools/test/genomecov/genome.txt
/usr/share/bedtools/test/genomecov/mk-deep.py
/usr/share/bedtools/test/genomecov/one_block.sam
/usr/share/bedtools/test/genomecov/pair-chip.sam
/usr/share/bedtools/test/genomecov/sam-w-del.sam
/usr/share/bedtools/test/genomecov/test-genomecov.sh
/usr/share/bedtools/test/genomecov/test_ref.fa
/usr/share/bedtools/test/genomecov/test_ref.fa.fai
/usr/share/bedtools/test/genomecov/three_blocks.sam
/usr/share/bedtools/test/genomecov/three_blocks_match.bed
/usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
/usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
/usr/share/bedtools/test/genomecov/two_blocks.sam
/usr/share/bedtools/test/genomecov/y.bam
/usr/share/bedtools/test/genomecov/y.bed
/usr/share/bedtools/test/getfasta/blocks.bed
/usr/share/bedtools/test/getfasta/rna.bed
/usr/share/bedtools/test/getfasta/rna.fasta
/usr/share/bedtools/test/getfasta/rna.fasta.fai
/usr/share/bedtools/test/getfasta/t.bed
/usr/share/bedtools/test/getfasta/t.fa
/usr/share/bedtools/test/getfasta/t.fa.fai
/usr/share/bedtools/test/getfasta/t.fa.gz
/usr/share/bedtools/test/getfasta/t.fa.gz.fai
/usr/share/bedtools/test/getfasta/t.fa.gz.gzi
/usr/share/bedtools/test/getfasta/t_fH.fa
/usr/share/bedtools/test/getfasta/t_fH.fa.fai
/usr/share/bedtools/test/getfasta/test-getfasta.sh
/usr/share/bedtools/test/getfasta/test.iupac.bed
/usr/share/bedtools/test/getfasta/test.iupac.fa
/usr/share/bedtools/test/groupby/a_vcfSVtest.vcf
/usr/share/bedtools/test/groupby/bug569_problem.txt
/usr/share/bedtools/test/groupby/gdc.bam
/usr/share/bedtools/test/groupby/noPosvalues.header.bed
/usr/share/bedtools/test/groupby/test-groupby.sh
/usr/share/bedtools/test/groupby/test.bed
/usr/share/bedtools/test/groupby/values3.7fields.header.bed
/usr/share/bedtools/test/groupby/values3.header.bed
/usr/share/bedtools/test/groupby/values3.no_header.bed
/usr/share/bedtools/test/groupby/values3.unmarked_header.bed
/usr/share/bedtools/test/groupby/values3.unmarked_header.bed.2
/usr/share/bedtools/test/groupby/values3_case.header.bed
/usr/share/bedtools/test/intersect/a.bam
/usr/share/bedtools/test/intersect/a.bed
/usr/share/bedtools/test/intersect/a.cram
/usr/share/bedtools/test/intersect/a.issue311.bed
/usr/share/bedtools/test/intersect/aVSb.bam
/usr/share/bedtools/test/intersect/aWithHeaderVsB.txt
/usr/share/bedtools/test/intersect/a_bgzipped.bed.gz
/usr/share/bedtools/test/intersect/a_gzipped.bed.gz
/usr/share/bedtools/test/intersect/a_testZeroLen.bed
/usr/share/bedtools/test/intersect/a_vcfSVtest.vcf
/usr/share/bedtools/test/intersect/a_withLargeHeader.bed
/usr/share/bedtools/test/intersect/a_withLargeHeader_bgzipped.bed.gz
/usr/share/bedtools/test/intersect/a_withLargeHeader_gzipped.bed.gz
/usr/share/bedtools/test/intersect/a_with_bothUnmapped.bam
/usr/share/bedtools/test/intersect/b.bed
/usr/share/bedtools/test/intersect/b.cram
/usr/share/bedtools/test/intersect/b.issue311.gff
/usr/share/bedtools/test/intersect/b.issue311.vcf
/usr/share/bedtools/test/intersect/b_testZeroLen.bed
/usr/share/bedtools/test/intersect/b_vcfSVtest.vcf
/usr/share/bedtools/test/intersect/bed3.bed
/usr/share/bedtools/test/intersect/bed4.bed
/usr/share/bedtools/test/intersect/bed5.bed
/usr/share/bedtools/test/intersect/bed6.bed
/usr/share/bedtools/test/intersect/bed6.strand.bed
/usr/share/bedtools/test/intersect/bed6.strand2.bed
/usr/share/bedtools/test/intersect/bedplus.bed
/usr/share/bedtools/test/intersect/blocks.bed12
/usr/share/bedtools/test/intersect/bug150_a.bed
/usr/share/bedtools/test/intersect/bug150_b.bed
/usr/share/bedtools/test/intersect/bug167_strandSweep.bed
/usr/share/bedtools/test/intersect/bug187_a.bed
/usr/share/bedtools/test/intersect/bug187_b.bed
/usr/share/bedtools/test/intersect/bug223_d.vcf
/usr/share/bedtools/test/intersect/bug223_e.vcf
/usr/share/bedtools/test/intersect/bug223_f.vcf
/usr/share/bedtools/test/intersect/bug223_sv1_a.vcf
/usr/share/bedtools/test/intersect/bug223_sv1_b.vcf
/usr/share/bedtools/test/intersect/bug44_a.vcf.gz
/usr/share/bedtools/test/intersect/bug44_b.bed
/usr/share/bedtools/test/intersect/c.bed
/usr/share/bedtools/test/intersect/chromOrderA.bed
/usr/share/bedtools/test/intersect/chromOrderB.bed
/usr/share/bedtools/test/intersect/chromsOutOfOrder.bed
/usr/share/bedtools/test/intersect/d.bed
/usr/share/bedtools/test/intersect/dosLineCharWithExtraTab_b.bed
/usr/share/bedtools/test/intersect/dosLineChar_a.bed
/usr/share/bedtools/test/intersect/e.bed
/usr/share/bedtools/test/intersect/exons.issue750.bed
/usr/share/bedtools/test/intersect/foo
/usr/share/bedtools/test/intersect/gdc.bam
/usr/share/bedtools/test/intersect/gdc.gff
/usr/share/bedtools/test/intersect/gdc_exp
/usr/share/bedtools/test/intersect/gdc_one.bed
/usr/share/bedtools/test/intersect/headerOnly.vcf
/usr/share/bedtools/test/intersect/human.hg19.genome
/usr/share/bedtools/test/intersect/human.hg19.vSort.genome
/usr/share/bedtools/test/intersect/issue-919.bed
/usr/share/bedtools/test/intersect/issue-919.region.bed
/usr/share/bedtools/test/intersect/issue_773_b.bed
/usr/share/bedtools/test/intersect/issue_773_y.bed
/usr/share/bedtools/test/intersect/j1.bed
/usr/share/bedtools/test/intersect/jim.bed
/usr/share/bedtools/test/intersect/jim.vcf
/usr/share/bedtools/test/intersect/large_a.bed
/usr/share/bedtools/test/intersect/large_b.bed
/usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
/usr/share/bedtools/test/intersect/multi_intersect/d1.bed
/usr/share/bedtools/test/intersect/multi_intersect/d2.bed
/usr/share/bedtools/test/intersect/multi_intersect/d3.bed
/usr/share/bedtools/test/intersect/multi_intersect/d4.bed
/usr/share/bedtools/test/intersect/multi_intersect/d5.bed
/usr/share/bedtools/test/intersect/multi_intersect/d6.bed
/usr/share/bedtools/test/intersect/multi_intersect/d7.bed
/usr/share/bedtools/test/intersect/multi_intersect/d8.bed
/usr/share/bedtools/test/intersect/multi_intersect/d9.bed
/usr/share/bedtools/test/intersect/multi_intersect/g.bed
/usr/share/bedtools/test/intersect/multi_intersect/query.bed
/usr/share/bedtools/test/intersect/multi_intersect/query2.bed
/usr/share/bedtools/test/intersect/multi_intersect/query3.bed
/usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
/usr/share/bedtools/test/intersect/new_test-intersect.sh
/usr/share/bedtools/test/intersect/nonamecheck_a.bed
/usr/share/bedtools/test/intersect/nonamecheck_b.bed
/usr/share/bedtools/test/intersect/notexthdr.bam
/usr/share/bedtools/test/intersect/null_a.bed
/usr/share/bedtools/test/intersect/null_b.bed
/usr/share/bedtools/test/intersect/null_c.bed
/usr/share/bedtools/test/intersect/oneRecordNoNewline.bed
/usr/share/bedtools/test/intersect/oneUnmapped.bam
/usr/share/bedtools/test/intersect/one_block.sam
/usr/share/bedtools/test/intersect/performanceTest.sh
/usr/share/bedtools/test/intersect/queryUnmappedMateMappedCoordsInvalid.bam
/usr/share/bedtools/test/intersect/recordsOutOfOrder.bed
/usr/share/bedtools/test/intersect/sortAndNaming/alpha_all.bed
/usr/share/bedtools/test/intersect/sortAndNaming/alpha_missing.bed
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_500Kvs500K.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_5v5.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_chr1.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr500Kvs500K.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr5v5.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/currChr1.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/db500K.bed
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/dbchr1.bed
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/diffs.txt
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/q500K.bed
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/qchr1.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db1_gls.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db1_leadingZero.txt
/usr/share/bedtools/test/intersect/sortAndNaming/db1_noChr.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db1_num.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db2_num.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db2_numBackwards.bed
/usr/share/bedtools/test/intersect/sortAndNaming/db3_numBackwards.bed
/usr/share/bedtools/test/intersect/sortAndNaming/diffs.txt
/usr/share/bedtools/test/intersect/sortAndNaming/exp1
/usr/share/bedtools/test/intersect/sortAndNaming/num_all.bed
/usr/share/bedtools/test/intersect/sortAndNaming/num_missing.bed
/usr/share/bedtools/test/intersect/sortAndNaming/q1_gls.bed
/usr/share/bedtools/test/intersect/sortAndNaming/q1_num.bed
/usr/share/bedtools/test/intersect/sortAndNaming/q1a_num.bed
/usr/share/bedtools/test/intersect/sortAndNaming/sdb1.bed
/usr/share/bedtools/test/intersect/sortAndNaming/sq1.bed
/usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
/usr/share/bedtools/test/intersect/split.issue750.bam
/usr/share/bedtools/test/intersect/split.issue750.sam
/usr/share/bedtools/test/intersect/splitBug155_a.bed
/usr/share/bedtools/test/intersect/splitBug155_b.bed
/usr/share/bedtools/test/intersect/strand_with_star.a.bed
/usr/share/bedtools/test/intersect/strand_with_star.b.bed
/usr/share/bedtools/test/intersect/svlen.vcf
/usr/share/bedtools/test/intersect/test-intersect.sh
/usr/share/bedtools/test/intersect/test_ref.fa
/usr/share/bedtools/test/intersect/test_ref.fa.fai
/usr/share/bedtools/test/intersect/three_blocks.sam
/usr/share/bedtools/test/intersect/three_blocks_match.bam
/usr/share/bedtools/test/intersect/three_blocks_match.bed
/usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
/usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
/usr/share/bedtools/test/intersect/two_blocks.sam
/usr/share/bedtools/test/intersect/two_blocks_partial.bam
/usr/share/bedtools/test/intersect/two_blocks_partial.bam.bai
/usr/share/bedtools/test/intersect/two_blocks_partial.bed
/usr/share/bedtools/test/intersect/ultra-long-bed4.bed
/usr/share/bedtools/test/intersect/x.bam
/usr/share/bedtools/test/intersect/x.bed
/usr/share/bedtools/test/intersect/y.bed
/usr/share/bedtools/test/jaccard/a.bam
/usr/share/bedtools/test/jaccard/a.bed
/usr/share/bedtools/test/jaccard/a645.bed
/usr/share/bedtools/test/jaccard/aMixedStrands.bed
/usr/share/bedtools/test/jaccard/b.bed
/usr/share/bedtools/test/jaccard/b645.bed
/usr/share/bedtools/test/jaccard/bMixedStrands.bed
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