Package - bedtools

Package:  bedtools
apt-get install bedtools
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/b/bedtools/bedtools_2.31.1+dfsg-2_amd64.deb (Size: 661.8KiB)

PropertyValue
Packagebedtools
Version2.31.1+dfsg-2
Installed-Size2106
MaintainerDebian Med Packaging Team
Architectureamd64
Replacesfilo
Providesfilo
Dependslibbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4)
Conflictsfilo
Descriptionsuite of utilities for comparing genomic features
Description-md558af131119baf6930c142074f356e7c9
Homepagehttps://github.com/arq5x/bedtools2
Tagfield::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::suite, use::analysing, use::comparing, use::converting, use::filtering, works-with::biological-sequence
Sectionscience
Priorityoptional
Filenamepool/main/b/bedtools/bedtools_2.31.1+dfsg-2_amd64.deb
Size677680
MD5sum8b08eb74490c13a7c50382e786f5af41
SHA256d47c44e52eed5900a04f06966cf984bfd10b8330a0755ad82275f89e068425c4

Files in package

  • /usr/bin/annotateBed
  • /usr/bin/bamToBed
  • /usr/bin/bamToFastq
  • /usr/bin/bed12ToBed6
  • /usr/bin/bedToBam
  • /usr/bin/bedToIgv
  • /usr/bin/bedpeToBam
  • /usr/bin/bedtools
  • /usr/bin/closestBed
  • /usr/bin/clusterBed
  • /usr/bin/complementBed
  • /usr/bin/coverageBed
  • /usr/bin/expandCols
  • /usr/bin/fastaFromBed
  • /usr/bin/flankBed
  • /usr/bin/genomeCoverageBed
  • /usr/bin/getOverlap
  • /usr/bin/groupBy
  • /usr/bin/intersectBed
  • /usr/bin/linksBed
  • /usr/bin/mapBed
  • /usr/bin/maskFastaFromBed
  • /usr/bin/mergeBed
  • /usr/bin/multiBamCov
  • /usr/bin/multiIntersectBed
  • /usr/bin/nucBed
  • /usr/bin/pairToBed
  • /usr/bin/pairToPair
  • /usr/bin/randomBed
  • /usr/bin/shiftBed
  • /usr/bin/shuffleBed
  • /usr/bin/slopBed
  • /usr/bin/sortBed
  • /usr/bin/subtractBed
  • /usr/bin/tagBam
  • /usr/bin/unionBedGraphs
  • /usr/bin/windowBed
  • /usr/bin/windowMaker
  • /usr/share/bash-completion/completions/bedtools
  • /usr/share/bedtools/genomes/human.hg18.genome
  • /usr/share/bedtools/genomes/human.hg19.genome
  • /usr/share/bedtools/genomes/human.hg38.genome
  • /usr/share/bedtools/genomes/mouse.mm10.genome
  • /usr/share/bedtools/genomes/mouse.mm8.genome
  • /usr/share/bedtools/genomes/mouse.mm9.genome
  • /usr/share/doc/bedtools/README.md
  • /usr/share/doc/bedtools/README.test
  • /usr/share/doc/bedtools/changelog.Debian.gz
  • /usr/share/doc/bedtools/copyright
  • /usr/share/doc/bedtools/run-unit-test