Package - bedtools
Primary informations
Download package: http://deb.debian.org/debian/pool/main/b/bedtools/bedtools_2.31.1+dfsg-2_amd64.deb (Size: 661.8KiB)| Property | Value |
|---|---|
| Package | bedtools |
| Version | 2.31.1+dfsg-2 |
| Installed-Size | 2106 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Replaces | filo |
| Provides | filo |
| Depends | libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.0), liblzma5 (>= 5.1.1alpha+20120614), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4) |
| Conflicts | filo |
| Description | suite of utilities for comparing genomic features |
| Description-md5 | 58af131119baf6930c142074f356e7c9 |
| Homepage | https://github.com/arq5x/bedtools2 |
| Tag | field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, scope::suite, use::analysing, use::comparing, use::converting, use::filtering, works-with::biological-sequence |
| Section | science |
| Priority | optional |
| Filename | pool/main/b/bedtools/bedtools_2.31.1+dfsg-2_amd64.deb |
| Size | 677680 |
| MD5sum | 8b08eb74490c13a7c50382e786f5af41 |
| SHA256 | d47c44e52eed5900a04f06966cf984bfd10b8330a0755ad82275f89e068425c4 |
Files in package
- /usr/bin/annotateBed
- /usr/bin/bamToBed
- /usr/bin/bamToFastq
- /usr/bin/bed12ToBed6
- /usr/bin/bedToBam
- /usr/bin/bedToIgv
- /usr/bin/bedpeToBam
- /usr/bin/bedtools
- /usr/bin/closestBed
- /usr/bin/clusterBed
- /usr/bin/complementBed
- /usr/bin/coverageBed
- /usr/bin/expandCols
- /usr/bin/fastaFromBed
- /usr/bin/flankBed
- /usr/bin/genomeCoverageBed
- /usr/bin/getOverlap
- /usr/bin/groupBy
- /usr/bin/intersectBed
- /usr/bin/linksBed
- /usr/bin/mapBed
- /usr/bin/maskFastaFromBed
- /usr/bin/mergeBed
- /usr/bin/multiBamCov
- /usr/bin/multiIntersectBed
- /usr/bin/nucBed
- /usr/bin/pairToBed
- /usr/bin/pairToPair
- /usr/bin/randomBed
- /usr/bin/shiftBed
- /usr/bin/shuffleBed
- /usr/bin/slopBed
- /usr/bin/sortBed
- /usr/bin/subtractBed
- /usr/bin/tagBam
- /usr/bin/unionBedGraphs
- /usr/bin/windowBed
- /usr/bin/windowMaker
- /usr/share/bash-completion/completions/bedtools
- /usr/share/bedtools/genomes/human.hg18.genome
- /usr/share/bedtools/genomes/human.hg19.genome
- /usr/share/bedtools/genomes/human.hg38.genome
- /usr/share/bedtools/genomes/mouse.mm10.genome
- /usr/share/bedtools/genomes/mouse.mm8.genome
- /usr/share/bedtools/genomes/mouse.mm9.genome
- /usr/share/doc/bedtools/README.md
- /usr/share/doc/bedtools/README.test
- /usr/share/doc/bedtools/changelog.Debian.gz
- /usr/share/doc/bedtools/copyright
- /usr/share/doc/bedtools/run-unit-test