Package - bbmap

Package:  bbmap
apt-get install bbmap
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/b/bbmap/bbmap_39.20+dfsg-2_all.deb (Size: 10.3MiB)

PropertyValue
Packagebbmap
Version39.20+dfsg-2
Installed-Size11466
MaintainerDebian Med Packaging Team
Architectureall
Providesbbtools
Dependslibmpj-java, default-jre-headless | java-runtime-headless
Recommendspigz
DescriptionBBTools genomic aligner and other tools for short sequences
Description-md511554aad63e51af31dbc4fe8fe6f1828
Homepagehttps://sourceforge.net/projects/bbmap/
Sectionscience
Priorityoptional
Filenamepool/main/b/bbmap/bbmap_39.20+dfsg-2_all.deb
Size10780068
MD5suma32d5b0613819c07e28528d8d40c4390
SHA2564b188f754f552d1621bb47709eca80ba299dcaaec93b0a1475dea13abdb0ff94

Files in package

  • /usr/bin/bbduk.sh
  • /usr/bin/bbmap.sh
  • /usr/bin/bbnorm.sh
  • /usr/bin/bloomfilter.sh
  • /usr/bin/dedupe.sh
  • /usr/bin/reformat.sh
  • /usr/share/bbmap/Xcalcmem.sh
  • /usr/share/bbmap/a_sample_mt.sh
  • /usr/share/bbmap/addadapters.sh
  • /usr/share/bbmap/addssu.sh
  • /usr/share/bbmap/adjusthomopolymers.sh
  • /usr/share/bbmap/alltoall.sh
  • /usr/share/bbmap/analyzeaccession.sh
  • /usr/share/bbmap/analyzegenes.sh
  • /usr/share/bbmap/analyzesketchresults.sh
  • /usr/share/bbmap/applyvariants.sh
  • /usr/share/bbmap/bbcms.sh
  • /usr/share/bbmap/bbcountunique.sh
  • /usr/share/bbmap/bbcrisprfinder.sh
  • /usr/share/bbmap/bbduk.sh
  • /usr/share/bbmap/bbest.sh
  • /usr/share/bbmap/bbfakereads.sh
  • /usr/share/bbmap/bbmap.sh
  • /usr/share/bbmap/bbmapskimmer.sh
  • /usr/share/bbmap/bbmask.sh
  • /usr/share/bbmap/bbmerge-auto.sh
  • /usr/share/bbmap/bbmerge.sh
  • /usr/share/bbmap/bbnorm.sh
  • /usr/share/bbmap/bbrealign.sh
  • /usr/share/bbmap/bbrename.sh
  • /usr/share/bbmap/bbsketch.sh
  • /usr/share/bbmap/bbsort.sh
  • /usr/share/bbmap/bbsplit.sh
  • /usr/share/bbmap/bbsplitpairs.sh
  • /usr/share/bbmap/bbstats.sh
  • /usr/share/bbmap/bbversion.sh
  • /usr/share/bbmap/bbwrap.sh
  • /usr/share/bbmap/bloomfilter.sh
  • /usr/share/bbmap/bloomfilterparser.sh
  • /usr/share/bbmap/calcmem.sh
  • /usr/share/bbmap/calctruequality.sh
  • /usr/share/bbmap/callgenes.sh
  • /usr/share/bbmap/callpeaks.sh
  • /usr/share/bbmap/callvariants.sh
  • /usr/share/bbmap/callvariants2.sh
  • /usr/share/bbmap/cat.sh
  • /usr/share/bbmap/cg2illumina.sh
  • /usr/share/bbmap/checkstrand.sh
  • /usr/share/bbmap/clumpify.sh
  • /usr/share/bbmap/commonkmers.sh
  • /usr/share/bbmap/comparegff.sh
  • /usr/share/bbmap/comparelabels.sh
  • /usr/share/bbmap/comparesketch.sh
  • /usr/share/bbmap/comparessu.sh
  • /usr/share/bbmap/comparevcf.sh
  • /usr/share/bbmap/consect.sh
  • /usr/share/bbmap/consensus.sh
  • /usr/share/bbmap/copyfile.sh
  • /usr/share/bbmap/countbarcodes.sh
  • /usr/share/bbmap/countbarcodes2.sh
  • /usr/share/bbmap/countduplicates.sh
  • /usr/share/bbmap/countgc.sh
  • /usr/share/bbmap/countsharedlines.sh
  • /usr/share/bbmap/crossblock.sh
  • /usr/share/bbmap/crosscontaminate.sh
  • /usr/share/bbmap/cutgff.sh
  • /usr/share/bbmap/cutprimers.sh
  • /usr/share/bbmap/decontaminate.sh
  • /usr/share/bbmap/dedupe.sh
  • /usr/share/bbmap/dedupe2.sh
  • /usr/share/bbmap/dedupebymapping.sh
  • /usr/share/bbmap/demuxbyname.sh
  • /usr/share/bbmap/demuxserver.sh
  • /usr/share/bbmap/diskbench.sh
  • /usr/share/bbmap/estherfilter.sh
  • /usr/share/bbmap/explodetree.sh
  • /usr/share/bbmap/fetchproks.sh
  • /usr/share/bbmap/filterassemblysummary.sh
  • /usr/share/bbmap/filterbarcodes.sh
  • /usr/share/bbmap/filterbycoverage.sh
  • /usr/share/bbmap/filterbyname.sh
  • /usr/share/bbmap/filterbysequence.sh
  • /usr/share/bbmap/filterbytaxa.sh
  • /usr/share/bbmap/filterbytile.sh
  • /usr/share/bbmap/filterlines.sh
  • /usr/share/bbmap/filterqc.sh
  • /usr/share/bbmap/filtersam.sh
  • /usr/share/bbmap/filtersilva.sh
  • /usr/share/bbmap/filtersubs.sh
  • /usr/share/bbmap/filtervcf.sh
  • /usr/share/bbmap/findrepeats.sh
  • /usr/share/bbmap/fixgaps.sh
  • /usr/share/bbmap/fungalrelease.sh
  • /usr/share/bbmap/fuse.sh
  • /usr/share/bbmap/gbff2gff.sh
  • /usr/share/bbmap/getreads.sh
  • /usr/share/bbmap/gi2ancestors.sh
  • /usr/share/bbmap/gi2taxid.sh
  • /usr/share/bbmap/gitable.sh
  • /usr/share/bbmap/gradebins.sh
  • /usr/share/bbmap/grademerge.sh
  • /usr/share/bbmap/gradesam.sh
  • /usr/share/bbmap/icecreamfinder.sh
  • /usr/share/bbmap/icecreamgrader.sh
  • /usr/share/bbmap/icecreammaker.sh
  • /usr/share/bbmap/idmatrix.sh
  • /usr/share/bbmap/idtree.sh
  • /usr/share/bbmap/invertkey.sh
  • /usr/share/bbmap/kapastats.sh
  • /usr/share/bbmap/kcompress.sh
  • /usr/share/bbmap/keepbestcopy.sh
  • /usr/share/bbmap/khist.sh
  • /usr/share/bbmap/kmercountexact.sh
  • /usr/share/bbmap/kmercountmulti.sh
  • /usr/share/bbmap/kmercoverage.sh
  • /usr/share/bbmap/kmerfilterset.sh
  • /usr/share/bbmap/kmerlimit.sh
  • /usr/share/bbmap/kmerlimit2.sh
  • /usr/share/bbmap/kmerposition.sh
  • /usr/share/bbmap/kmutate.sh
  • /usr/share/bbmap/lilypad.sh
  • /usr/share/bbmap/loadreads.sh
  • /usr/share/bbmap/loglog.sh
  • /usr/share/bbmap/makechimeras.sh
  • /usr/share/bbmap/makecontaminatedgenomes.sh
  • /usr/share/bbmap/makepolymers.sh
  • /usr/share/bbmap/makequickbinvector.sh
  • /usr/share/bbmap/mapPacBio.sh
  • /usr/share/bbmap/matrixtocolumns.sh
  • /usr/share/bbmap/mergeOTUs.sh
  • /usr/share/bbmap/mergebarcodes.sh
  • /usr/share/bbmap/mergepgm.sh
  • /usr/share/bbmap/mergeribo.sh
  • /usr/share/bbmap/mergesam.sh
  • /usr/share/bbmap/mergesketch.sh
  • /usr/share/bbmap/mergesorted.sh
  • /usr/share/bbmap/microalign.sh
  • /usr/share/bbmap/msa.sh
  • /usr/share/bbmap/mutate.sh
  • /usr/share/bbmap/muxbyname.sh
  • /usr/share/bbmap/netfilter.sh
  • /usr/share/bbmap/novademux.sh
  • /usr/share/bbmap/partition.sh
  • /usr/share/bbmap/phylip2fasta.sh
  • /usr/share/bbmap/picksubset.sh
  • /usr/share/bbmap/pileup.sh
  • /usr/share/bbmap/pileup2.sh
  • /usr/share/bbmap/plotflowcell.sh
  • /usr/share/bbmap/plotgc.sh
  • /usr/share/bbmap/plothist.sh
  • /usr/share/bbmap/plotreadposition.sh
  • /usr/share/bbmap/polyfilter.sh
  • /usr/share/bbmap/postfilter.sh
  • /usr/share/bbmap/printtime.sh
  • /usr/share/bbmap/processfrag.sh
  • /usr/share/bbmap/processhi-c.sh
  • /usr/share/bbmap/processspeed.sh
  • /usr/share/bbmap/quickbin.sh
  • /usr/share/bbmap/randomgenome.sh
  • /usr/share/bbmap/randomreads.sh
  • /usr/share/bbmap/randomreadsmg.sh
  • /usr/share/bbmap/readlength.sh
  • /usr/share/bbmap/readqc.sh
  • /usr/share/bbmap/reducecolumns.sh
  • /usr/share/bbmap/reducesilva.sh
  • /usr/share/bbmap/reformat.sh
  • /usr/share/bbmap/reformatpb.sh
  • /usr/share/bbmap/removebadbarcodes.sh
  • /usr/share/bbmap/removecatdogmousehuman.sh
  • /usr/share/bbmap/removehuman.sh
  • /usr/share/bbmap/removehuman2.sh
  • /usr/share/bbmap/removemicrobes.sh
  • /usr/share/bbmap/removesmartbell.sh
  • /usr/share/bbmap/rename.sh
  • /usr/share/bbmap/renamebymapping.sh
  • /usr/share/bbmap/renamebysketch.sh
  • /usr/share/bbmap/renameimg.sh
  • /usr/share/bbmap/repair.sh
  • /usr/share/bbmap/replaceheaders.sh
  • /usr/share/bbmap/representative.sh
  • /usr/share/bbmap/rqcfilter.sh
  • /usr/share/bbmap/rqcfilter2.sh
  • /usr/share/bbmap/runhmm.sh
  • /usr/share/bbmap/samtoroc.sh
  • /usr/share/bbmap/scoresequence.sh
  • /usr/share/bbmap/seal.sh
  • /usr/share/bbmap/sendsketch.sh
  • /usr/share/bbmap/seqtovec.sh
  • /usr/share/bbmap/shred.sh
  • /usr/share/bbmap/shrinkaccession.sh
  • /usr/share/bbmap/shuffle.sh
  • /usr/share/bbmap/shuffle2.sh
  • /usr/share/bbmap/sketch.sh
  • /usr/share/bbmap/sketchblacklist.sh
  • /usr/share/bbmap/sketchblacklist2.sh
  • /usr/share/bbmap/sortbyname.sh
  • /usr/share/bbmap/splitbytaxa.sh
  • /usr/share/bbmap/splitnextera.sh
  • /usr/share/bbmap/splitribo.sh
  • /usr/share/bbmap/splitsam.sh
  • /usr/share/bbmap/splitsam4way.sh
  • /usr/share/bbmap/splitsam6way.sh
  • /usr/share/bbmap/stats.sh
  • /usr/share/bbmap/stats3.sh
  • /usr/share/bbmap/statswrapper.sh
  • /usr/share/bbmap/streamsam.sh
  • /usr/share/bbmap/subsketch.sh
  • /usr/share/bbmap/summarizecontam.sh
  • /usr/share/bbmap/summarizecoverage.sh
  • /usr/share/bbmap/summarizecrossblock.sh
  • /usr/share/bbmap/summarizemerge.sh
  • /usr/share/bbmap/summarizequast.sh
  • /usr/share/bbmap/summarizescafstats.sh
  • /usr/share/bbmap/summarizeseal.sh
  • /usr/share/bbmap/summarizesketch.sh
  • /usr/share/bbmap/synthmda.sh
  • /usr/share/bbmap/tadpipe.sh
  • /usr/share/bbmap/tadpole.sh
  • /usr/share/bbmap/tadwrapper.sh
  • /usr/share/bbmap/tagandmerge.sh
  • /usr/share/bbmap/taxonomy.sh
  • /usr/share/bbmap/taxserver.sh
  • /usr/share/bbmap/taxsize.sh
  • /usr/share/bbmap/taxtree.sh
  • /usr/share/bbmap/testfilesystem.sh
  • /usr/share/bbmap/testformat.sh
  • /usr/share/bbmap/testformat2.sh
  • /usr/share/bbmap/tetramerfreq.sh
  • /usr/share/bbmap/textfile.sh
  • /usr/share/bbmap/tiledump.sh
  • /usr/share/bbmap/train.sh
  • /usr/share/bbmap/translate6frames.sh
  • /usr/share/bbmap/trimcontigs.sh
  • /usr/share/bbmap/unicode2ascii.sh
  • /usr/share/bbmap/unzip.sh
  • /usr/share/bbmap/vcf2gff.sh
  • /usr/share/bbmap/webcheck.sh
  • /usr/share/doc/bbmap/README.Debian
  • /usr/share/doc/bbmap/RestartingServers.txt
  • /usr/share/doc/bbmap/TableOfContents.txt.gz
  • /usr/share/doc/bbmap/ToolDescriptions.txt.gz
  • /usr/share/doc/bbmap/UsageGuide.txt.gz
  • /usr/share/doc/bbmap/bbcms.txt.gz
  • /usr/share/doc/bbmap/changelog.Debian.gz
  • /usr/share/doc/bbmap/changelog.gz
  • /usr/share/doc/bbmap/citation.txt
  • /usr/share/doc/bbmap/copyright
  • /usr/share/doc/bbmap/guides/A_SampleGuide.txt
  • /usr/share/doc/bbmap/guides/AddAdaptersGuide.txt
  • /usr/share/doc/bbmap/guides/BBDukGuide.txt.gz
  • /usr/share/doc/bbmap/guides/BBMapGuide.txt.gz
  • /usr/share/doc/bbmap/guides/BBMap_old_readme.txt.gz
  • /usr/share/doc/bbmap/guides/BBMaskGuide.txt
  • /usr/share/doc/bbmap/guides/BBMergeGuide.txt.gz
  • /usr/share/doc/bbmap/guides/BBNormGuide.txt.gz
  • /usr/share/doc/bbmap/guides/BBSketchGuide.txt.gz
  • /usr/share/doc/bbmap/guides/CalcUniquenessGuide.txt
  • /usr/share/doc/bbmap/guides/CallVariantsGuide.txt.gz
  • /usr/share/doc/bbmap/guides/ClumpifyGuide.txt
  • /usr/share/doc/bbmap/guides/DedupeGuide.txt.gz
  • /usr/share/doc/bbmap/guides/FilterByTileGuide.txt.gz
  • /usr/share/doc/bbmap/guides/PreprocessingGuide.txt
  • /usr/share/doc/bbmap/guides/ReformatGuide.txt.gz
  • /usr/share/doc/bbmap/guides/RepairGuide.txt
  • /usr/share/doc/bbmap/guides/SealGuide.txt.gz
  • /usr/share/doc/bbmap/guides/SplitNexteraGuide.txt
  • /usr/share/doc/bbmap/guides/StatsGuide.txt
  • /usr/share/doc/bbmap/guides/TadpoleGuide.txt.gz
  • /usr/share/doc/bbmap/guides/TaxonomyGuide.txt.gz
  • /usr/share/doc/bbmap/readme.txt
  • /usr/share/doc/bbmap/readme_config.txt
  • /usr/share/doc/bbmap/readme_filetypes.txt
  • /usr/share/java/bbmap.jar
  • /usr/share/lintian/overrides/bbmap
  • /usr/share/man/man1/bbduk.sh.1.gz
  • /usr/share/man/man1/bbmap.sh.1.gz
  • /usr/share/man/man1/bbnorm.sh.1.gz
  • /usr/share/man/man1/bloomfilter.sh.1.gz
  • /usr/share/man/man1/dedupe.sh.1.gz
  • /usr/share/man/man1/reformat.sh.1.gz