Package - augustus
Primary informations
Download package: http://deb.debian.org/debian/pool/main/a/augustus/augustus_3.5.0+dfsg-5_amd64.deb (Size: 2.1MiB)| Property | Value |
|---|---|
| Package | augustus |
| Version | 3.5.0+dfsg-5 |
| Installed-Size | 11588 |
| Maintainer | Debian Med Packaging Team |
| Architecture | amd64 |
| Depends | libbamtools2.5.2 (>= 2.5.2+dfsg), libboost-iostreams1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcolamd3 (>= 1:7.0.1), libgcc-s1 (>= 3.0), libgsl28 (>= 2.8+dfsg), libhts3t64 (>= 1.17), libmariadb3 (>= 3.0.0), libmysql++3t64, libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), augustus-data |
| Recommends | samtools |
| Suggests | cdbfasta, diamond-aligner, libfile-which-perl, libparallel-forkmanager-perl, libyaml-perl, libdbd-mysql-perl, python3-biopython |
| Description | gene prediction in eukaryotic genomes |
| Description-md5 | ab0f2f2c476597fc454d6e64ee4cdcaf |
| Homepage | https://bioinf.uni-greifswald.de/augustus/ |
| Tag | field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, science::calculation, scope::utility, uitoolkit::ncurses, use::analysing, works-with::biological-sequence |
| Section | science |
| Priority | optional |
| Filename | pool/main/a/augustus/augustus_3.5.0+dfsg-5_amd64.deb |
| Size | 2173588 |
| MD5sum | e43d3f2ae2d3792df851a6aaced34178 |
| SHA256 | aafc03430d2e4257d0854e56f239d3a522d37790af08108c8b8828d6ba330705 |
Files in package
- /usr/bin/aln2wig
- /usr/bin/augustus
- /usr/bin/bam2hints
- /usr/bin/bam2wig
- /usr/bin/compileSpliceCands
- /usr/bin/etraining
- /usr/bin/fastBlockSearch
- /usr/bin/filterBam
- /usr/bin/getSeq
- /usr/bin/homGeneMapping
- /usr/bin/joingenes
- /usr/bin/load2db
- /usr/bin/load2sqlitedb
- /usr/bin/pp_simScore
- /usr/bin/prepareAlign
- /usr/share/augustus/scripts/README.autoAug
- /usr/share/augustus/scripts/SplicedAlignment.pm
- /usr/share/augustus/scripts/aa2nonred.pl
- /usr/share/augustus/scripts/add_name_to_gff3.pl
- /usr/share/augustus/scripts/augustify.py
- /usr/share/augustus/scripts/augustus2browser.pl
- /usr/share/augustus/scripts/augustus2gbrowse.pl
- /usr/share/augustus/scripts/autoAug.pl
- /usr/share/augustus/scripts/autoAugPred.pl
- /usr/share/augustus/scripts/autoAugTrain.pl
- /usr/share/augustus/scripts/bamToWig.py
- /usr/share/augustus/scripts/bedgraph2wig.pl
- /usr/share/augustus/scripts/blat2gbrowse.pl
- /usr/share/augustus/scripts/blat2hints.pl
- /usr/share/augustus/scripts/block2prfl.pl
- /usr/share/augustus/scripts/cegma2gff.pl
- /usr/share/augustus/scripts/checkParamArchive.pl
- /usr/share/augustus/scripts/checkUTR
- /usr/share/augustus/scripts/cleanDOSfasta.pl
- /usr/share/augustus/scripts/clusterAndSplitGenes.pl
- /usr/share/augustus/scripts/compare_masking.pl
- /usr/share/augustus/scripts/computeFlankingRegion.pl
- /usr/share/augustus/scripts/createAugustusJoblist.pl
- /usr/share/augustus/scripts/del_from_prfl.pl
- /usr/share/augustus/scripts/evalCGP.pl
- /usr/share/augustus/scripts/eval_dualdecomp.pl
- /usr/share/augustus/scripts/eval_multi_gtf.pl
- /usr/share/augustus/scripts/exonerate2hints.pl
- /usr/share/augustus/scripts/exoniphyDb2hints.pl
- /usr/share/augustus/scripts/extractAnno.py
- /usr/share/augustus/scripts/extractTranscriptEnds.pl
- /usr/share/augustus/scripts/filter-ppx.pl
- /usr/share/augustus/scripts/filterGenes.pl
- /usr/share/augustus/scripts/filterGenesIn.pl
- /usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
- /usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
- /usr/share/augustus/scripts/filterInFrameStopCodons.pl
- /usr/share/augustus/scripts/filterMaf.pl
- /usr/share/augustus/scripts/filterPSL.pl
- /usr/share/augustus/scripts/filterShrimp.pl
- /usr/share/augustus/scripts/filterSpliceHints.pl
- /usr/share/augustus/scripts/findGffNamesInFasta.pl
- /usr/share/augustus/scripts/findRepetitiveProtSeqs.py
- /usr/share/augustus/scripts/fix_in_frame_stop_codon_genes.py
- /usr/share/augustus/scripts/fix_joingenes_gtf.pl
- /usr/share/augustus/scripts/gbSmallDNA2gff.pl
- /usr/share/augustus/scripts/gbrowse.conf
- /usr/share/augustus/scripts/gbrowseold2gff3.pl
- /usr/share/augustus/scripts/getAnnoFasta.pl
- /usr/share/augustus/scripts/getAnnoFastaFromJoingenes.py
- /usr/share/augustus/scripts/getLinesMatching.pl
- /usr/share/augustus/scripts/get_loci_from_gb.pl
- /usr/share/augustus/scripts/gff2gbSmallDNA.pl
- /usr/share/augustus/scripts/gff2ps_mycustom
- /usr/share/augustus/scripts/gffGetmRNA.pl
- /usr/share/augustus/scripts/gp2othergp.pl
- /usr/share/augustus/scripts/gtf2aa.pl
- /usr/share/augustus/scripts/gtf2bed.pl
- /usr/share/augustus/scripts/gtf2gff.pl
- /usr/share/augustus/scripts/gth2gtf.pl
- /usr/share/augustus/scripts/hal2maf_split.pl
- /usr/share/augustus/scripts/helpMod.pm
- /usr/share/augustus/scripts/joinPeptides.pl
- /usr/share/augustus/scripts/join_aug_pred.pl
- /usr/share/augustus/scripts/join_mult_hints.pl
- /usr/share/augustus/scripts/maf2conswig.pl
- /usr/share/augustus/scripts/makeMatchLists.pl
- /usr/share/augustus/scripts/makeUtrTrainingSet.pl
- /usr/share/augustus/scripts/maskNregions.pl
- /usr/share/augustus/scripts/merge_masking.pl
- /usr/share/augustus/scripts/moveParameters.pl
- /usr/share/augustus/scripts/msa2prfl.pl
- /usr/share/augustus/scripts/new_species.pl
- /usr/share/augustus/scripts/opt_init_and_term_probs.pl
- /usr/share/augustus/scripts/optimize_augustus.pl
- /usr/share/augustus/scripts/parseSim4Output.pl
- /usr/share/augustus/scripts/partition_gtf2gb.pl
- /usr/share/augustus/scripts/pasapolyA2hints.pl
- /usr/share/augustus/scripts/peptides2alternatives.pl
- /usr/share/augustus/scripts/peptides2hints.pl
- /usr/share/augustus/scripts/phastconsDB2hints.pl
- /usr/share/augustus/scripts/polyA2hints.pl
- /usr/share/augustus/scripts/prints2prfl.pl
- /usr/share/augustus/scripts/pslMap.pl
- /usr/share/augustus/scripts/randomSplit.pl
- /usr/share/augustus/scripts/rename_species.pl
- /usr/share/augustus/scripts/retroDB2hints.pl
- /usr/share/augustus/scripts/rmRedundantHints.pl
- /usr/share/augustus/scripts/runAllSim4.pl
- /usr/share/augustus/scripts/samMap.pl
- /usr/share/augustus/scripts/scipiogff2gff.pl
- /usr/share/augustus/scripts/setStopCodonFreqs.pl
- /usr/share/augustus/scripts/simpleFastaHeaders.pl
- /usr/share/augustus/scripts/simplifyFastaHeaders.pl
- /usr/share/augustus/scripts/splitMfasta.pl
- /usr/share/augustus/scripts/split_wiggle.pl
- /usr/share/augustus/scripts/stringtie2fa.py
- /usr/share/augustus/scripts/summarizeACGTcontent.pl
- /usr/share/augustus/scripts/transMap2hints.pl
- /usr/share/augustus/scripts/uniquePeptides.pl
- /usr/share/augustus/scripts/utrgff2gbrowse.pl
- /usr/share/augustus/scripts/webserver-results.head
- /usr/share/augustus/scripts/webserver-results.tail
- /usr/share/augustus/scripts/weedMaf.pl
- /usr/share/augustus/scripts/wig2hints.pl
- /usr/share/augustus/scripts/wigchoose.pl
- /usr/share/augustus/scripts/writeResultsPage.pl
- /usr/share/augustus/scripts/yaml2gff.1.4.pl
- /usr/share/doc/augustus/HISTORY.TXT.gz
- /usr/share/doc/augustus/changelog.Debian.gz
- /usr/share/doc/augustus/changelog.gz
- /usr/share/doc/augustus/copyright
- /usr/share/man/man1/aln2wig.1.gz
- /usr/share/man/man1/augustus.1.gz
- /usr/share/man/man1/bam2hints.1.gz
- /usr/share/man/man1/bam2wig.1.gz
- /usr/share/man/man1/compileSpliceCands.1.gz
- /usr/share/man/man1/etraining.1.gz
- /usr/share/man/man1/fastBlockSearch.1.gz
- /usr/share/man/man1/filterBam.1.gz
- /usr/share/man/man1/getSeq.1.gz
- /usr/share/man/man1/homGeneMapping.1.gz
- /usr/share/man/man1/joingenes.1.gz
- /usr/share/man/man1/load2db.1.gz
- /usr/share/man/man1/load2sqlitedb.1.gz
- /usr/share/man/man1/pp_simScore.1.gz
- /usr/share/man/man1/prepareAlign.1.gz