Package - augur
Primary informations
Download package: http://deb.debian.org/debian/pool/main/a/augur/augur_24.4.0-1_all.deb (Size: 255.1KiB)| Property | Value |
|---|---|
| Package | augur |
| Version | 24.4.0-1 |
| Installed-Size | 1056 |
| Maintainer | Debian Med Packaging Team |
| Architecture | all |
| Depends | python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools |
| Recommends | iqtree |
| Description | pipeline components for real-time virus analysis |
| Description-md5 | e2aaa44840d7b632d0e95700bc100196 |
| Homepage | https://github.com/nextstrain/augur |
| Section | science |
| Priority | optional |
| Filename | pool/main/a/augur/augur_24.4.0-1_all.deb |
| Size | 261232 |
| MD5sum | b572f222840d0090638ca16dde37b5e6 |
| SHA256 | 54cf77ceaea54e677ac39643f62ead613bbd628037ce9c203f3d64cfe727f5f0 |
Files in package
- /usr/bin/augur
- /usr/lib/python3/dist-packages/augur/__init__.py
- /usr/lib/python3/dist-packages/augur/__main__.py
- /usr/lib/python3/dist-packages/augur/__version__.py
- /usr/lib/python3/dist-packages/augur/align.py
- /usr/lib/python3/dist-packages/augur/ancestral.py
- /usr/lib/python3/dist-packages/augur/argparse_.py
- /usr/lib/python3/dist-packages/augur/clades.py
- /usr/lib/python3/dist-packages/augur/curate/__init__.py
- /usr/lib/python3/dist-packages/augur/curate/format_dates.py
- /usr/lib/python3/dist-packages/augur/curate/format_dates_directives.py
- /usr/lib/python3/dist-packages/augur/curate/normalize_strings.py
- /usr/lib/python3/dist-packages/augur/curate/passthru.py
- /usr/lib/python3/dist-packages/augur/curate/titlecase.py
- /usr/lib/python3/dist-packages/augur/data/__init__.py
- /usr/lib/python3/dist-packages/augur/data/colors.tsv
- /usr/lib/python3/dist-packages/augur/data/lat_longs.tsv
- /usr/lib/python3/dist-packages/augur/data/schema-annotations.json
- /usr/lib/python3/dist-packages/augur/data/schema-auspice-config-v2.json
- /usr/lib/python3/dist-packages/augur/data/schema-export-root-sequence.json
- /usr/lib/python3/dist-packages/augur/data/schema-export-v1-meta.json
- /usr/lib/python3/dist-packages/augur/data/schema-export-v1-tree.json
- /usr/lib/python3/dist-packages/augur/data/schema-export-v2.json
- /usr/lib/python3/dist-packages/augur/data/schema-frequencies.json
- /usr/lib/python3/dist-packages/augur/data/schema-measurements-collection-config.json
- /usr/lib/python3/dist-packages/augur/data/schema-measurements.json
- /usr/lib/python3/dist-packages/augur/data/schema-tip-frequencies.json
- /usr/lib/python3/dist-packages/augur/dates/__init__.py
- /usr/lib/python3/dist-packages/augur/dates/ambiguous_date.py
- /usr/lib/python3/dist-packages/augur/dates/errors.py
- /usr/lib/python3/dist-packages/augur/distance.py
- /usr/lib/python3/dist-packages/augur/errors.py
- /usr/lib/python3/dist-packages/augur/export.py
- /usr/lib/python3/dist-packages/augur/export_v1.py
- /usr/lib/python3/dist-packages/augur/export_v2.py
- /usr/lib/python3/dist-packages/augur/filenames.py
- /usr/lib/python3/dist-packages/augur/filter/__init__.py
- /usr/lib/python3/dist-packages/augur/filter/_run.py
- /usr/lib/python3/dist-packages/augur/filter/constants.py
- /usr/lib/python3/dist-packages/augur/filter/include_exclude_rules.py
- /usr/lib/python3/dist-packages/augur/filter/io.py
- /usr/lib/python3/dist-packages/augur/filter/subsample.py
- /usr/lib/python3/dist-packages/augur/filter/validate_arguments.py
- /usr/lib/python3/dist-packages/augur/frequencies.py
- /usr/lib/python3/dist-packages/augur/frequency_estimators.py
- /usr/lib/python3/dist-packages/augur/import_/__init__.py
- /usr/lib/python3/dist-packages/augur/import_/beast.py
- /usr/lib/python3/dist-packages/augur/index.py
- /usr/lib/python3/dist-packages/augur/io/__init__.py
- /usr/lib/python3/dist-packages/augur/io/file.py
- /usr/lib/python3/dist-packages/augur/io/json.py
- /usr/lib/python3/dist-packages/augur/io/metadata.py
- /usr/lib/python3/dist-packages/augur/io/print.py
- /usr/lib/python3/dist-packages/augur/io/sequences.py
- /usr/lib/python3/dist-packages/augur/io/shell_command_runner.py
- /usr/lib/python3/dist-packages/augur/io/strains.py
- /usr/lib/python3/dist-packages/augur/io/vcf.py
- /usr/lib/python3/dist-packages/augur/lbi.py
- /usr/lib/python3/dist-packages/augur/mask.py
- /usr/lib/python3/dist-packages/augur/measurements/__init__.py
- /usr/lib/python3/dist-packages/augur/measurements/concat.py
- /usr/lib/python3/dist-packages/augur/measurements/export.py
- /usr/lib/python3/dist-packages/augur/parse.py
- /usr/lib/python3/dist-packages/augur/reconstruct_sequences.py
- /usr/lib/python3/dist-packages/augur/refine.py
- /usr/lib/python3/dist-packages/augur/sequence_traits.py
- /usr/lib/python3/dist-packages/augur/titer_model.py
- /usr/lib/python3/dist-packages/augur/titers.py
- /usr/lib/python3/dist-packages/augur/traits.py
- /usr/lib/python3/dist-packages/augur/translate.py
- /usr/lib/python3/dist-packages/augur/tree.py
- /usr/lib/python3/dist-packages/augur/types.py
- /usr/lib/python3/dist-packages/augur/util_support/__init__.py
- /usr/lib/python3/dist-packages/augur/util_support/color_parser.py
- /usr/lib/python3/dist-packages/augur/util_support/color_parser_line.py
- /usr/lib/python3/dist-packages/augur/util_support/node_data.py
- /usr/lib/python3/dist-packages/augur/util_support/node_data_file.py
- /usr/lib/python3/dist-packages/augur/util_support/node_data_reader.py
- /usr/lib/python3/dist-packages/augur/utils.py
- /usr/lib/python3/dist-packages/augur/validate.py
- /usr/lib/python3/dist-packages/augur/validate_export.py
- /usr/lib/python3/dist-packages/augur/version.py
- /usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/PKG-INFO
- /usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/dependency_links.txt
- /usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/entry_points.txt
- /usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/requires.txt
- /usr/lib/python3/dist-packages/nextstrain_augur-24.4.0.egg-info/top_level.txt
- /usr/share/doc/augur/changelog.Debian.gz
- /usr/share/doc/augur/changelog.gz
- /usr/share/doc/augur/copyright
- /usr/share/man/man1/augur.1.gz