Package - abyss

Package:  abyss
apt-get install abyss
Manuals in package:
Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/a/abyss/abyss_2.3.10-1+b1_amd64.deb (Size: 3.2MiB)

PropertyValue
Packageabyss
Sourceabyss (2.3.10-1)
Version2.3.10-1+b1
Installed-Size10021
MaintainerDebian Med Packaging Team
Architectureamd64
Dependsmake, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libopenmpi40 (>= 5.0.6), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 14), perl:any, bsdextrautils, openmpi-common, openmpi-bin
Descriptionde novo, parallel, sequence assembler for short reads
Description-md57c736de2ab206e6ade42c9f95ff44b4a
Homepagehttps://github.com/bcgsc/abyss
Tagfield::biology, implemented-in::c, interface::commandline, role::program
Sectionscience
Priorityoptional
Filenamepool/main/a/abyss/abyss_2.3.10-1+b1_amd64.deb
Size3324444
MD5sumb80e5bb6baa42fb2b47046cf31d2f9b9
SHA25611b8351069431facb5670ca135e462f2ab0ebe8618e805938782757b556ed898

Files in package

  • /usr/bin/DistanceEst
  • /usr/bin/abyss-fixmate
  • /usr/bin/abyss-pe
  • /usr/lib/abyss/ABYSS
  • /usr/lib/abyss/ABYSS-P
  • /usr/lib/abyss/AdjList
  • /usr/lib/abyss/Consensus
  • /usr/lib/abyss/DAssembler
  • /usr/lib/abyss/DistanceEst
  • /usr/lib/abyss/DistanceEst-ssq
  • /usr/lib/abyss/KAligner
  • /usr/lib/abyss/MergeContigs
  • /usr/lib/abyss/MergePaths
  • /usr/lib/abyss/Overlap
  • /usr/lib/abyss/ParseAligns
  • /usr/lib/abyss/PathConsensus
  • /usr/lib/abyss/PathOverlap
  • /usr/lib/abyss/PopBubbles
  • /usr/lib/abyss/SimpleGraph
  • /usr/lib/abyss/abyss-align
  • /usr/lib/abyss/abyss-bloom
  • /usr/lib/abyss/abyss-bloom-dbg
  • /usr/lib/abyss/abyss-bloom-dist.mk
  • /usr/lib/abyss/abyss-bowtie
  • /usr/lib/abyss/abyss-bowtie2
  • /usr/lib/abyss/abyss-bwa
  • /usr/lib/abyss/abyss-bwamem
  • /usr/lib/abyss/abyss-bwasw
  • /usr/lib/abyss/abyss-db-csv
  • /usr/lib/abyss/abyss-db-txt
  • /usr/lib/abyss/abyss-dida
  • /usr/lib/abyss/abyss-fac
  • /usr/lib/abyss/abyss-fatoagp
  • /usr/lib/abyss/abyss-filtergraph
  • /usr/lib/abyss/abyss-fixmate
  • /usr/lib/abyss/abyss-fixmate-ssq
  • /usr/lib/abyss/abyss-gapfill
  • /usr/lib/abyss/abyss-gc
  • /usr/lib/abyss/abyss-index
  • /usr/lib/abyss/abyss-junction
  • /usr/lib/abyss/abyss-kaligner
  • /usr/lib/abyss/abyss-layout
  • /usr/lib/abyss/abyss-longseqdist
  • /usr/lib/abyss/abyss-map
  • /usr/lib/abyss/abyss-map-ssq
  • /usr/lib/abyss/abyss-mergepairs
  • /usr/lib/abyss/abyss-overlap
  • /usr/lib/abyss/abyss-paired-dbg
  • /usr/lib/abyss/abyss-paired-dbg-mpi
  • /usr/lib/abyss/abyss-pe
  • /usr/lib/abyss/abyss-rresolver-short
  • /usr/lib/abyss/abyss-samtoafg
  • /usr/lib/abyss/abyss-scaffold
  • /usr/lib/abyss/abyss-sealer
  • /usr/lib/abyss/abyss-stack-size
  • /usr/lib/abyss/abyss-tabtomd
  • /usr/lib/abyss/abyss-todot
  • /usr/lib/abyss/abyss-tofastq
  • /usr/lib/abyss/konnector
  • /usr/lib/abyss/logcounter
  • /usr/share/doc-base/abyss.abyss-flowcharts
  • /usr/share/doc/abyss/CITATION.bib
  • /usr/share/doc/abyss/CITATION.md
  • /usr/share/doc/abyss/README.html
  • /usr/share/doc/abyss/README.md.gz
  • /usr/share/doc/abyss/README.test
  • /usr/share/doc/abyss/changelog.Debian.amd64.gz
  • /usr/share/doc/abyss/changelog.Debian.gz
  • /usr/share/doc/abyss/changelog.gz
  • /usr/share/doc/abyss/copyright
  • /usr/share/doc/abyss/flowchart.pdf.gz
  • /usr/share/doc/abyss/flowchart_simplified.pdf.gz
  • /usr/share/doc/abyss/run-unit-test
  • /usr/share/doc/abyss/test-data/reads1.fastq.gz
  • /usr/share/doc/abyss/test-data/reads2.fastq.gz
  • /usr/share/man/man1/DistanceEst.1.gz
  • /usr/share/man/man1/abyss-fixmate.1.gz
  • /usr/share/man/man1/abyss-pe.1.gz