Man page - mclfamily(7)
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Manual
mcl
NAMEDESCRIPTION
NAME
mclfamily - a description of the mcl family of cluster applications.
mcl is an implementation of the Markov Cluster Algorithm, aka MCL algoritm. It is described in the mcl manual . Several other applications are part of the MCL distribution. This manual pages gives an overview.
DESCRIPTION
mcl(1)
the cluster algorithm
mclfaq(7)
MCL Frequently Asked Questions
mcxio(5)
the network/matrix input/output format
mcx(1)
general network/matrix tasks
mcx diameter
compute diameter of an undirected
network
mcx ctty
compute betweenness centrality
mcx clcf
compute clustering coefficient
mcx erdos
compute shortest paths in graphs
mcx query
analyse networks at different thresholds
mcx alter
apply network transformations
mcx convert
convert between interchange/binary
storage types
mcxarray(1)
transform array data to MCL matrices
mcxdump(1)
dump a matrix optionally with label
substitions
mcxload(1)
load label data into matrix and tab files
mcxrand(1)
randomly remove, add, and perturb edge
weights
mcxmap(1)
relabel indices in a graph/matrix
mcxsubs(1)
extracting submatrices in various ways
mcxi(1)
general matrix operations
clm(1)
general graph-clustering related tasks
clm dist
compute split/join distance between
clusterings
clm vol
derive node volatility scores from a set of
clusterings
clm info
compute performance measure for
clusterings
clm meet
compute intersection of clusterings
clm mate
find best matching clusters between
clusterings
clm close
fetch connected components from graphs or
subgraphs
clm imac
interpret MCL iterand/matrix as clustering
clm order
reorder indices to represent blocks from
different clusterings
clm residue
extend subgraph clustering
mclblastline(1)
BLAST
*
pipeline
mcxdeblast(1)
*
parse BLAST files
Entries marked * are not available if only a default install is done.