Man page - xtractore(1)

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Package: aegean
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xtractore - extract sequences corresponding to annotated features from the given sequence file

xtractore [ options ] features.gff3 sequences.fasta

Options:
-d |--debug

print debugging output

-h |--help

print this help message and exit

-i |--idfile: FILE

file containing a list of feature IDs (1 per line with no spaces); if provided, only features with IDs in this file will be extracted

-o |--outfile: FILE

file to which output sequences will be written; default is terminal (stdout)

-t |--type: STRING

feature type to extract; can be used multiple times to extract features of multiple types

-v |--version

print version number and exit

-V |--verbose

print verbose warning and error messages

-w |--width: INT

width of each line of sequence in the Fasta output; default is 80; set to 0 for no formatting