Man page - vfdb_cdhit_to_csv(1)

Packages contains this manual

Package:  srst2
apt-get install srst2

Manuals in package:
• get_all_vfdb(1)
• getmlst(1)
• csv_to_gene_db(1)
• srst2(1)
• slurm_srst2(1)
• get_genus_vfdb(1)
Documentations in package:
• srst2

Manual

VFDB_CDHIT_TO_CSV

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
optional arguments:
AUTHOR

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NAME

VFDB_cdhit_to_csv - Parse cdhit results

SYNOPSIS

VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE

DESCRIPTION

This tool is part of the SRST2 suite.

Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis

OPTIONS

optional arguments:

-h , --help

show this help message and exit

--cluster_file CLUSTER_FILE

cd hit output file (.clstr)

--infile INFILE

raw sequences file that was input to cdhit (fasta)

--outfile OUTFILE

output file (csv)

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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