Man page - uc-echo(1)
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Manual
UC-ECHO
NAMESYNOPSIS
OPTIONS
NAME
uc-echo - Short-read Error Correction
SYNOPSIS
uc-echo [ options ] read_file_name
OPTIONS
-h , --help
show this help message and exit
-o OUTPUT_FILENAME, --output = OUTPUT_FILENAME
Output file name
-l LOG_FILENAME, --log = LOG_FILENAME
Log file name
--DD = TMP_DIRECTORY , --tmp_dir = TMP_DIRECTORY
Temporary data directory
-u NCPU, --ncpu = NCPU
Number of processes used in training
-b BSIZE, --block_size = BSIZE
Split data into blocks of specified size
--nh = NHASH , --n_hash_block = NHASH
Split hash table into n tables
--rm = READ_MERGE , --read_merge_size = READ_MERGE
Merge n hash tables at a time
--hm = HASH_MERGE , --hash_merge_batch_size = HASH_MERGE
Merge n adjacency lists at a time
-k K, --kmer = K
k-mer size used for hashing
-e E, --min_error_tolerance = E
Minimum error tolerance for parameter searching
-E E, --max_error_tolerance = E
Maximum error tolerance for parameter searching
--hh = H , --min_minimum_overlap = H
Minimum minimum overlap length for parameter searching
--hH = H , --max_minimum_overlap = H
Maximum minimum overlap length for parameter searching
--h_rate = H_RATE , --heterozygous_rate = H_RATE
Rate for heterozygous site
--model_selection_size = MSIZE
Model selection data set size
--keep_all_files
Keep all temporary files. By default, temporary files are deleted automatically.
-h , --help
show this help message and exit
-o OUTPUT_FILENAME, --output = OUTPUT_FILENAME
Output file name
-l LOG_FILENAME, --log = LOG_FILENAME
Log file name
--DD = TMP_DIRECTORY , --tmp_dir = TMP_DIRECTORY
Temporary data directory
-u NCPU, --ncpu = NCPU
Number of processes used in training
-b BSIZE, --block_size = BSIZE
Split data into blocks of specified size
--nh = NHASH , --n_hash_block = NHASH
Split hash table into n tables
--rm = READ_MERGE , --read_merge_size = READ_MERGE
Merge n hash tables at a time
--hm = HASH_MERGE , --hash_merge_batch_size = HASH_MERGE
Merge n adjacency lists at a time
-k K, --kmer = K
k-mer size used for hashing
-e E, --min_error_tolerance = E
Minimum error tolerance for parameter searching
-E E, --max_error_tolerance = E
Maximum error tolerance for parameter searching
--hh = H , --min_minimum_overlap = H
Minimum minimum overlap length for parameter searching
--hH = H , --max_minimum_overlap = H
Maximum minimum overlap length for parameter searching
--h_rate = H_RATE , --heterozygous_rate = H_RATE
Rate for heterozygous site
--model_selection_size = MSIZE
Model selection data set size
--keep_all_files
Keep all temporary files. By default, temporary files are deleted automatically.