Man page - sort-bed(1)

Packages contains this manual

Package:  bedops
apt-get install bedops

Manuals in package:
• starchcluster_sge(1)
• bedmap(1)
• bedops-starch(1)
• bam2bed(1)
• starchstrip(1)
• bam2bed_slurm(1)
• gff2bed(1)
• bam2starch_slurm(1)
• gtf2starch(1)
• bam2starch_sge(1)
• psl2bed(1)
• psl2starch(1)
• vcf2starch(1)
• closest-features(1)
• bedops(1)
• bedextract(1)
• gtf2bed(1)
• sort-bed(1)
• wig2bed(1)
• bam2bed_sge(1)
• sam2starch(1)
• gvf2bed(1)
• gvf2starch(1)
• sam2bed(1)
• rmsk2starch(1)
• bam2starch(1)
• unstarch(1)
• gff2starch(1)
• starchcluster_slurm(1)
• starchcat(1)
• rmsk2bed(1)
• convert2bed(1)
• vcf2bed(1)
• wig2starch(1)
Documentations in package:
• bedops

Manual

SORT-BED

NAME
DESCRIPTION
SEE ALSO

---

NAME

sort-bed - manual page for sort-bed 2.4.41+dfsg

DESCRIPTION

sort-bed

citation: http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract

https://doi.org/10.1093/bioinformatics/bts277

version:

2.4.41 (typical)

authors:

Scott Kuehn

USAGE: sort-bed [--help] [--version] [--check-sort] [--max-mem <val>] [--tmpdir <path>] [--unique] [--duplicates] <file1.bed> <file2.bed> <...>

Sort BED file(s). May use ’-’ to indicate stdin. Results are sent to stdout.

<val> for --max-mem may be 8G, 8000M, or 8000000000 to specify 8 GB of memory. --tmpdir is useful only with --max-mem . --unique can be used to print only unique BED elements (similar to ’sort -u ’). Cannot be used with --duplicates . --duplicates can be used to print only duplicated or repeated elements (similar to ’uniq -d ’). Cannot be used with --unique .

SEE ALSO

The full documentation for sort-bed is maintained as a Texinfo manual. If the info and sort-bed programs are properly installed at your site, the command

info sort-bed

should give you access to the complete manual.

---