Man page - sort-bed(1)
Packages contas this manual
- bam2starch_sge(1)
- closest-features(1)
- bam2starch(1)
- unstarch(1)
- psl2starch(1)
- gff2starch(1)
- starchstrip(1)
- bam2bed_slurm(1)
- starchcat(1)
- vcf2starch(1)
- bedmap(1)
- starchcluster_slurm(1)
- wig2bed(1)
- rmsk2starch(1)
- wig2starch(1)
- bedops-starch(1)
- bam2bed(1)
- bam2bed_sge(1)
- sort-bed(1)
- psl2bed(1)
- gtf2starch(1)
- gtf2bed(1)
- vcf2bed(1)
- bam2starch_slurm(1)
- convert2bed(1)
- bedops(1)
- gff2bed(1)
- sam2starch(1)
- sam2bed(1)
- bedextract(1)
- starchcluster_sge(1)
- gvf2bed(1)
- rmsk2bed(1)
- gvf2starch(1)
Package: bedops
apt-get install bedops
apt-get install bedops
Manuals in package:
Documentations in package:
Manual
| SORT-BED(1) | User Commands | SORT-BED(1) |
NAME
sort-bed - manual page for sort-bed 2.4.41+dfsg
DESCRIPTION
sort-bed
- citation: http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract
- https://doi.org/10.1093/bioinformatics/bts277
- version:
- 2.4.41 (typical)
- Scott Kuehn
USAGE: sort-bed [--help] [--version] [--check-sort] [--max-mem <val>] [--tmpdir <path>] [--unique] [--duplicates] <file1.bed> <file2.bed> <...>
- Sort BED file(s). May use '-' to indicate stdin. Results are sent to stdout.
- <val> for --max-mem may be 8G, 8000M, or 8000000000 to specify 8 GB of memory. --tmpdir is useful only with --max-mem. --unique can be used to print only unique BED elements (similar to 'sort -u'). Cannot be used with --duplicates. --duplicates can be used to print only duplicated or repeated elements (similar to 'uniq -d'). Cannot be used with --unique.
SEE ALSO
The full documentation for sort-bed is maintained as a Texinfo manual. If the info and sort-bed programs are properly installed at your site, the command
- info sort-bed
should give you access to the complete manual.
| December 2024 | sort-bed 2.4.41+dfsg |