Man page - snap-hmm(1)

Packages contains this manual

Package:  snap
apt-get install snap

Manuals in package:
• zoe-loop(1)
• exonpairs(1)
• hmm-info(1)
• patch-hmm.pl(1)
• fathom(1)
• hmm-assembler.pl(1)
• snap-hmm(1)
• forge(1)
• zff2gff3.pl(1)
Documentations in package:
• snap

Manual

SNAP

NAME
SYNOPSIS
OPTIONS

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NAME

snap-hmm - Semi-HMM-based Nucleic Acid Parser

SYNOPSIS

snap-hmm [ options ] < HMM file > < FASTA file > [ options ]

OPTIONS

-help

report useful information

-lcmask

treat lowercase as N

	-plus		predict on plus strand only
	-minus		predict on minus strand only
	-gff		output annotation as GFF
	-ace		output annotation as ACED
	-quiet		do not send progress to STDERR

-aa <file>

create FASTA file of proteins

-tx <file>

create FASTA file of transcripts

-xdef <file>

external definitions

-name <string>

name for the gene [default snap]

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