Man page - snap-aligner(1)

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Manual

SNAP-ALIGNER

NAME
SYNOPSIS
DESCRIPTION
Commands:

NAME

snap-aligner - scalable nucleotide alignment program

SYNOPSIS

snap-aligner <command> [ <options> ]

DESCRIPTION

Welcome to SNAP version 2.0.3.

Commands:

index

build a genome index

single

align single-end reads

paired

align paired-end reads

daemon

run in daemon mode--accept commands remotely

Type a command without arguments to see its help.