Man page - slice_fasta_gff(1)

Packages contains this manual

Package:  fsa
apt-get install fsa

Manuals in package:
• map_gff_coords(1)
• fsa-translate(1)
• map_coords(1)
• isect_mercator_alignment_gff(1)
• prot2codon(1)
• fsa(1)
• slice_fasta(1)
• gapcleaner(1)
• slice_fasta_gff(1)
• slice_mercator_alignment(1)
• percentid(1)
Documentations in package:
• fsa

Manual

SLICE_FASTA_GFF

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR

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NAME

slice_fasta_gff - Slice subsequences from an input FASTA file

SYNOPSIS

slice_fasta [ options ] <FASTA file> <GFF file>

DESCRIPTION

slice_fasta from FSA 1.15.9

OPTIONS

-t , --type <string>

only look at features of particular type

Slice subsequences from an input FASTA file. Assumes 1-based, fully-closed coordinates. If no strand information is available, then the + strand is assumed. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented.

Assumes a DNA alphabet.

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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