Man page - seqsplit(1)

Packages contains this manual

Package:  biosquid
apt-get install biosquid

Manuals in package:
• compstruct(1)
• shuffle(1)
• sreformat(1)
• afetch(1)
• compalign(1)
• alistat(1)
• weight(1)
• seqstat(1)
• sindex(1)
• stranslate(1)
• revcomp(1)
• sfetch(1)
• seqsplit(1)
Documentations in package:
• biosquid

Manual

SEQSPLIT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
LIMITATIONS
SEE ALSO
AUTHOR

---

NAME

seqsplit - split seqs into chunks of defined size and overlap

SYNOPSIS

seqsplit [-options] <seqfile>

DESCRIPTION

This manual page documents briefly the seqsplit command.

seqsplit is a program that splits sequences into smaller chunks of defined size and overlap; output a FASTA file.

OPTIONS

-h

Help; display usage and version.

-o <file>

Output the new FASTA file to <file>.

--fragfile <f>

Save one-line-per-frag coord summary file to <f>.

--informat <s>

Specify sequence file format <s>.

--length <n>

Set max length of each unique seq frag to <n>.

--overlap <n>

Set overlap length to <n> (total frag size = length+overlap).

--shortnames

Use short "frag1" names, not "<src>/<from>-<to>".

LIMITATIONS

Still working in 32 bits -- no sequence can be more than 2 GB in size.

SEE ALSO

afetch (1), alistat (1), compalign (1), compstruct (1), revcomp (1), seqstat (1), sfetch (1), shuffle (1), sindex (1), sreformat (1), stranslate (1), weight (1).

AUTHOR

Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy@genetics.wustl.edu

This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>,
for the Debian project (but may be used by others).

---