Man page - saint-spc-noctrl(1)

Packages contains this manual

Package:  saint
apt-get install saint

Manuals in package:
• saint-spc-noctrl(1)
• saint-spc-ctrl(1)
• saint-reformat(1)
• saint-int-ctrl(1)
• saint-spc-noctrl-matrix(1)
Documentations in package:
• saint

Manual

SAINT-SPC-NOCTRL

NAME
SYNOPSIS
DESCRIPTION
SEE ALSO

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NAME

saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data

SYNOPSIS

saint-spc-noctrl [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [fthres] [fgroup] [var] [normalize]

DESCRIPTION

-burnin and iter: burn-in period and main iteration of MCMC

-fthres : frequency threshold above which probability is set to 0

-fgroup : frequency boundary dividing high and low frequency groups

-var : binary [0/1] indicator for modeling variance of the count data distributions

-normalize : whether to normalize the counts by total spectral counts

SEE ALSO

You can download a PDF file with more detailed instructions from

http://sourceforge.net/projects/saint-apms/files/

which is called saint-vignette-<YYYYMonDD>.pdf.

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