Man page - rdp-alignment(1)

Packages contains this manual

Package:  rdp-alignment
apt-get install rdp-alignment

Manuals in package:
• rdp-alignment(1)
Documentations in package:
• rdp-alignment

Manual

RDP-ALIGNMENT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

---

NAME

rdp-alignment: - Ribosomal Database Project (RDP) alignment tools package

SYNOPSIS

rdp-alignment <subcommand> <options>

DESCRIPTION

The Alignment tools package contains commands to do defined community analysis, pairwise alignment and hidden markov model (HMMER3 models, no training).

OPTIONS

List of subcommands :
alignment-merger

- Merge alignments

pairwise-knn

- Compute k-nearest-neighbors by pairwise alignment

compare-error-type

- Detect insertion, deletion and substitution errors in sequences comparing to reference sequences

align-nucl-to-prot

- Transfer a sequence alignment from protein sequences to nucleotide sequences

rm-partialseq

- remove partial sequences based on pairwise alignment to reference sequences

---