Man page - picard-tools(1)

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Package: picard-tools
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Manual

PicardCommandLine

NAME
SYNOPSIS
DESCRIPTION
REPORTING BUGS
COPYRIGHT
SEE ALSO

NAME

PicardCommandLine - manipulate SAM and BAM files

SYNOPSIS

PicardCommandLine COMMAND [ OPTION ]...

DESCRIPTION

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.

Picard Tools includes lots of utilities to manipulate SAM and BAM files. The whole list with a short description can be obtained by running PicardCommandLine -h .

Description of the options and parameters of all commands can be obtained by running PicardCommandLine COMMAND -h .

REPORTING BUGS

samtools-devel@lists.sourceforge.net