Man page - pc-compare(1)

Packages contains this manual

Package:  probcons-extra
apt-get install probcons-extra

Manuals in package:
• pc-project(1)
• pc-makegnuplot(1)
• pc-compare(1)

Manual

PC-COMPARE

NAME
SYNOPSIS
NOTE
SEE ALSO
REFERENCE
AUTHORS
COPYRIGHT

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NAME

pc-compare - Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.

SYNOPSIS

pc-compare [ TEST_ALIGNMENT ] [ REFERENCE_ALIGNMENT ] [ BALIBASE_ANNOT_FILE ] [ -col ] [ -core ] [ -caps ] [ -annot FILENAME ]

NOTE

pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.

SEE ALSO

pc-makegnufile (1), pc-project (1),from the probcons-extra package, and probcons (1) and probcons-RNA (1) from the probcons package.

REFERENCE

Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.

AUTHORS

Chuong Do <chuongdo@cs.stanford.edu>

Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science, Stanford University.

Charles Plessy <charles-debian-nospam@plessy.org>

Wrote this manpage in DocBook XML for the Debian distribution.

COPYRIGHT

This program and its manpage are in the public domain.

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