Man page - modfreqs(1)

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Package:  phast
apt-get install phast

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• maf_parse(1)
• all_dists(1)
• exoniphy(1)
• base_evolve(1)
• draw_tree(1)
• refeature(1)
• phast(1)
• hmm_train(1)
• msa_view(1)
• stringiphy(1)
• msa_split(1)
• tree_doctor(1)
• convert_coords(1)
• hmm_tweak(1)
• hmm_view(1)
• dless(1)
• msa_diff(1)
• display_rate_matrix(1)
• clean_genes(1)
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• eval_predictions(1)
Documentations in package:
• phast

Manual

MODFREQS

NAME
DESCRIPTION
SYNOPSIS
OPTIONS

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NAME

modFreqs - Change background frequencies of reversible tree model in such

DESCRIPTION

Change background frequencies of reversible tree model in such a way that reversibility is maintained.

SYNOPSIS

modFreqs tree.mod <Afreq> <Cfreq> <Gfreq> <Tfreq> > new.mod

OR

modFreqs tree.mod <G+Cfreq> > new.mod

OPTIONS

--help , -h

Print this help message.

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