Man page - mecat(1)

Packages contains this manual

Package:  mecat2
apt-get install mecat2

Manuals in package:
• mecat(1)
• fsa_assemble(1)
• mecat2pcan(1)
• fsa_ctg_bridge(1)
• fsa_rd_stat(1)
• fsa_ol_filter(1)
Documentations in package:
• mecat2

Manual

MECAT

NAME
SYNOPSIS
DESCRIPTION

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NAME

mecat - Generate config file or assemble, trim or correct SMRT data

SYNOPSIS

mecat correct|assemble|config cfg_fname

DESCRIPTION

MECAT (v2) is an ultra-fast and accurate mapping, error correcting and de novo assembly tools for single molecula sequencing (SMRT) reads.

The parameters are defined as below:
correct:

Correct rawreads

trim:

Trim corrected reads

assemble:

Generate contigs

config:

Generate default config file

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