Man page - mcxalter(1)
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- mcxalter(1)
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apt-get install mcl
Manual
mcxalter
NAMESYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
SEE ALSO
NAME
mcxalter - various network transformations
SYNOPSIS
mcxalter [-imx <fname> ( specify matrix/graph input ) ] [-abc <fname> ( specify label input ) ] [-tab <fname> ( use tab file ) ] [-icl <fname> ( specify cluster input ) ] [--block ( use within-cluster edges ) ] [--blockc ( use between-cluster edges ) ] [-o <fname> ( output ) ] [-tf spec ( apply tf-spec to input matrix ) ]
DESCRIPTION
This utility supplies various transformations of networks.
OPTIONS
-abc
<fname> (
label input
)
The file name for input that is in label format.
-imx
<fname> (
input matrix
)
The file name for input that is in mcl native matrix
format.
-tab
<fname> (
use tab file
)
This option causes the output to be printed with the labels
found in the tab file. With
-abc
this option will,
additionally, construct a graph only on the labels found in
the tab file. If this option is used in conjunction with
-imx
the tab domain and the matrix domain are
required to be identical.
-icl
<fname> (
specify cluster input
)
Read in a cluster file for use with either
--block
or
--blockc
.
--block
(
use within-cluster edges
)
Remove between-cluster edges from the network. This is done
first, before other transformations take effect.
--blockc
(
use between-cluster edges
)
Remove within-cluster edges from the network. This is done
first, before other transformations take effect.
-tf
<tf-spec> (
transform input matrix values
)
Transform the input matrix values according to the syntax
described in
mcxio(5)
.
-o
fname
(
output file
)
Output file.
AUTHOR
Stijn van Dongen.
SEE ALSO
mcxio(5) , mcx(1) , mcxsubs(1) , and mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.