Man page - gmx-rama(1)
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apt-get install gromacs-data
Manual
GMX-RAMA
NAMESYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
COPYRIGHT
NAME
gmx-rama - Compute Ramachandran plots
SYNOPSIS
gmx rama
[
-f
[<.xtc/.trr/...>]
] [
-s
[<.tpr>]
] [
-o
[<.xvg>]
]
[
-b
<time>
]
[
-e
<time>
] [
-dt
<time>
] [
-[no]w
] [
-xvg
<enum>
]
DESCRIPTION
gmx rama selects the phi/psi dihedral combinations from your topology file and computes these as a function of time. Using simple Unix tools such as grep you can select out specific residues.
OPTIONS
Options to
specify input files:
-f [<.xtc/.trr/...>] (traj.xtc)
Trajectory: xtc trr cpt gro g96 pdb tng
-s [<.tpr>] (topol.tpr)
Portable xdr run input file
Options to
specify output files:
-o [<.xvg>] (rama.xvg)
xvgr/xmgr file
Other options:
-b <time> (0)
Time of first frame to read from trajectory (default unit ps)
-e <time> (0)
Time of last frame to read from trajectory (default unit ps)
-dt <time> (0)
Only use frame when t MOD dt = first time (default unit ps)
-[no]w (no)
View output .xvg , .xpm , .eps and .pdb files
-xvg <enum> (xmgrace)
xvg plot formatting: xmgrace, xmgr, none
SEE ALSO
gmx(1)
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COPYRIGHT
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