Man page - gbrowse_syn_load_alignment_database(1)
Packages contains this manual
- gbrowse_import_ucsc_db(1)
- gbrowse_clean(1)
- gbrowse_aws_balancer(1)
- gbrowse_syn_load_alignments_msa(1)
- ucsc_genes2gff(1)
- gbrowse_metadb_config(1)
- load_genbank(1)
- make_das_conf(1)
- bed2gff3(1)
- gbrowse_grow_cloud_vol(1)
- wiggle2gff3(1)
- scan_gbrowse(1)
- gbrowse_sync_aws_slave(1)
- gbrowse_slave(1)
- gbrowse_change_passwd(1)
- gbrowse_syn_load_alignment_database(1)
- gbrowse_create_account(1)
- gtf2gff3(1)
- gbrowse(1)
- gbrowse_set_admin_passwd(1)
Package: gbrowse
apt-get install gbrowse
apt-get install gbrowse
Manuals in package:
Documentations in package:
Manual
GBrowse2
NAMEDESCRIPTION
AUTHOR
NAME
gbrowse_syn_load_alignment_database - Script to load the database for gbrowse_syn
DESCRIPTION
The expected
file format is tab-delimited (shown below):
species1 ref1 start1 end1 strand1 cigar_string1 species2
ref2 start2 end2 strand2 cigar_string2 coords1... |
coords2...
the coordinate format: pos1_species1 pos1_species2 ...
posn_species1 posn_species2 | pos1_species2 pos1_species1
... posn_species2 posn_species1,
where pos is the matching sequence coordinate (ungapped) in
each species.
AUTHOR
Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging Lincoln Stein - GBrowse