Man page - cyvcf2(1)

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Package: python3-cyvcf2
apt-get install python3-cyvcf2

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cyvcf2 - fast parsing of VCF and BCF including region-queries

cyvcf2 [ OPTIONS ] <vcf_file> or -

fast vcf parsing with cython + htslib

-c , --chrom TEXT

Specify what chromosome to include.

-s , --start INTEGER

Specify the start of region.

-e , --end INTEGER

Specify the end of the region.

--include TEXT

Specify what info field to include.

--exclude TEXT

Specify what info field to exclude.

-i , --individual TEXT

Only print genotype call for individual.

--no-inds

Do not print genotypes.

--loglevel [DEBUG|INFO|WARNING|ERROR|CRITICAL]

Set the level of log output. [default: INFO]

--silent

Skip printing of vcf.

--help

Show this message and exit.