Man page - compare_genomes(1)

Packages contains this manual

Package:  mcaller
apt-get install mcaller

Manuals in package:
• make_bed(1)
• compare_genomes(1)
Documentations in package:
• mcaller

Manual

COMPARE_GENOMES.PY

NAME
DESCRIPTION
optional arguments:

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NAME

compare_genomes.py - find methylation in nanopore reads

DESCRIPTION

usage: compare_genomes.py [-h] --bed1 BED1 --bed2 BED2 [-g GENOME_ALIGNMENT]

[-v]

Compare methylation between two genomes by probabilities of methylation for aligned positions

optional arguments:

-h , --help

show this help message and exit

--bed1 BED1

bed file 1 with verbose output from make_bed.py

--bed2 BED2

bed file 2 with verbose output from make_bed.py

-g GENOME_ALIGNMENT, --genome_alignment GENOME_ALIGNMENT

an xmfa file from mauve (if absent, alignments assumed to be to the same reference genome)

-v , --version

print version

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