Man page - cif2tsv(1)
Packages contains this manual
- dic2markdown(1)
- ssg3d(1)
- cif_fillcell(1)
- cif_polymer_multiplicity(1)
- ddlm_validate(1)
- cif_validate(1)
- cif_tags_in_list(1)
- sdf_add_cod_data(1)
- cif_ddlm_dic_check(1)
- codcif2sdf(1)
- cif_hkl_check(1)
- cif2xyz(1)
- msg_parse(1)
- spacegroup_properties(1)
- cif_cod_check(1)
- cif_set_value(1)
- cif_classify(1)
- formula_sum(1)
- cif_bounding_box(1)
- cif2json(1)
- cod-tools-version(1)
- cif_filter(1)
- ddl1-to-ddlm(1)
- cif_values(1)
- cif_sort_atoms(1)
- cif_mpod_v3_to_v1(1)
- cif_diff(1)
- cifvalues(1)
- find_numbers(1)
- cif_symop_apply(1)
- cif_split(1)
- cif_fix_values(1)
- cif_compare_dics(1)
- cif_cell_contents(1)
- symop_build_spacegroup(1)
- oqmd2cif(1)
- cif_overlay(1)
- ssg_symop_string(1)
- cif_reformat_uppercase_author_names(1)
- codxyz2ortho(1)
- ssg_symop_canonical(1)
- cif2tsv(1)
- cif_list_tags(1)
- cif_ddlm_dic_print(1)
- cif_dictionary_tags(1)
- symops(1)
- utf8-to-cif(1)
- syminv(1)
- cif_select(1)
- cod_fetch(1)
- cif_mpod_v1_to_v2(1)
- cif_cod_deposit(1)
- cif2ref(1)
- fetch_cif_dict(1)
- codxyz2fract(1)
- cif_reformat_pubmed_author_names(1)
- cif2csv(1)
- cif_mark_disorder(1)
- cif_correct_tags(1)
- cif_mpod_v2_to_v1(1)
- cif2cod(1)
- cif-to-utf8(1)
- cif2rdf(1)
- molcif2sdf(1)
- cif_reduce_cell(1)
- json2cif(1)
- cif_find_symmetry(1)
- cif_cod_numbers(1)
- cif_eval_numbers(1)
- cif_p1(1)
- cif_mpod_v1_to_v3(1)
- ssg_symop_check(1)
- cifparse(1)
- cif_ddl1_dic_check(1)
- cod2rdf(1)
- ssg_symop_matrices(1)
- cif_parse(1)
- cif_adjust_journal_name_volume(1)
- cif2qg(1)
- cosets(1)
- cif_tcod_tree(1)
- cif_molecule(1)
- cif_find_duplicates(1)
- cod_manage_related(1)
- cif_distances(1)
- cif_split_primitive(1)
- symmul(1)
- cif_automorphism(1)
- cif_merge(1)
apt-get install cod-tools
Manual
CIF2TSV
NAMESYNOPSIS
DESCRIPTION
OPTIONS
REPORTING BUGS
NAME
cif2tsv - get specified data values from a CIF file(s).
SYNOPSIS
src/components/codcif/cif2tsv --options < input.cif
src/components/codcif/cif2tsv --options input.cif
src/components/codcif/cif2tsv --options input1.cif input2.cif inputs*.cif
DESCRIPTION
Get specified data values from a CIF file(s).
OPTIONS
-h, --header,
-h-, --no-header
Print/do not print (default) the column name header
-a, --all-tags
Extract data for all data names (default).
Overrides ’--tags’.
-t, --tags
_cell_length_a,_cell_volume
Extract the specified data items.
-g,
--group-separator $’0
--newline-characters $’0
Specify a group separator that separates TSV/CSV/ADT
"lines" (default "0)
-r,
--record-separator $’’
--separator $’’
Use the specified string to separate values
of different data items (default " ").
-u,
--unit-separator "|"
--value-separator "|"
--vseparator "|"
Use the specified string to separate multiple
values of each looped data item (default "|").
-p,
--replacement " "
A charater to which all separators are replaced
in the non-quoting output formats (TSV and ADT).
-D, --dos-newlines
-M, --mac-newlines
-U,
--unix-newlines
Set new line convention to DOS, MAC or Unix (default)
Same as --group-separator with an appropriate string
’$’0)
(e.g. --dos-newlines in bash is --group-sep $’
--tsv-output,
--csv-output, --adt-output
Set separators for the TSV, CSV or ADT
(ASCII delimited text, using ASCII GS, RS and US chars)
output. Default depends on how program is called:
’cif2csv’, ’cif2tsv’ or
’cif2adt’
--filename
Print filename in the output.
--no-filename
Don’t print filename in the output (default).
--datablock-name,
--dataname
Print data block names in the output (default).
--no-datablock-name,
--no-dataname
Do not print data block names in the output.
-d, --debug
Print internal program data structures for debugging.
--version
Print program version (SVN Id) and exit.
--help
Print short usage message (this message) and exit.
REPORTING BUGS
Report cif2tsv bugs using e-mail: cod-bugs@ibt.lt