Man page - cif-grep(1)

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Package: cif-tools
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cif-tools

Manual

cif-grep

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
REPORTING BUGS
SEE ALSO

NAME

cif-grep - A tool like grep to print fields in mmCIF files that match patterns

SYNOPSIS

cif-grep [OPTION] pattern file1 [file2..]

DESCRIPTION

This tool tries to work in a similar way as grep by searching mmCIF files comparing the content of fields to patterns.

OPTIONS

Multiple files can be specified to search. If a directory name if specified, all files in that directory will be searched. Use the --recursive flag to do a recursive search.
--item =<item>, -i <item>

Limit the search to only the item specified in <item> . Default is to search all items. Item should be of the form ’_category.item’ with the leading underscore.

--quiet , -q

Print only the file names that match the pattern.

--count , -c

Only show the number of hits.

--invert-match , -v

Only select the fields that do not match the pattern.

--line-number , -n

Print the line numbers.

--no-filename , -h

Do not print the filename.

--with-filename , -H

Do print the filename.

--files-with-matches , -l

Print only the names of the files containing matches.

--recursive , -r

Search recursively.

--verbose , -V

Be more verbose, useful to diagnose validation errors.

AUTHOR

Written by Maarten L. Hekkelman <maarten@hekkelman.com>

REPORTING BUGS

Report bugs at https://github.com/PDB-REDO/cif-tools/issues