Man page - cdkdepict(1)

Packages contains this manual

Package:  smiles-scripts
apt-get install smiles-scripts

Manuals in package:
• cdkdepict(1)
• cdksdf2smiles(1)
• smi_isomorphism(1)
• sdf-to-smi(1)
• cdkcif2xyz(1)
• cdkcif2smiles(1)
• smi_canonicalise(1)
• cdkcif2sdf(1)
• cdkrecharge(1)
Documentations in package:
• smiles-scripts

Manual

CDKDEPICT

NAME
DESCRIPTION
OPTIONS:

---

NAME

cdkdepict - draw SVG image for SMILES

DESCRIPTION

Depict molecules given as SMILES strings in SVG, PDF PS (PostScript) or EPS (Encapsulated PS) formats.

USAGE

cdkdepict < input.smi cdkdepict inputs*.smi

OPTIONS:

-a , --auto-kekulise

Attempt to "kekulise" aromatic smiles, switch to non-kekulised representation if kekulisation fails (default)

-k , --kekulise

Always "kekulise" aromatic smiles

-k- , --dont-kekulise , --do-not-kekulise

Do not "kekulise" aromatic smiles, leave input as it is

--smiles c1ccccc1

Specify SMILES string to depict instead of reading input files

	-S , --svg-output Produce SVG output
	-E , --eps-output Produce EPS output
	-P , --pdf-output Produce PDF output
	--supported-formats

List formats supported for a given input

--version

Print program version and exit

--help

Print short help message (this message) and exit

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