Man page - bppalnoptim(1)

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Package: physamp
apt-get install physamp

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bppalnoptim - Sequence alignment optimization according to the number of sequences vs. number of sites trade-off

bppalnoptim [options]

All UNIX flavors

bppalnoptim samples sequences from an alignment in order to maximize the number of sites with a given minimal coverage.

You should refer to ’info physamp’ or to the online manual of physamp for a complete list of available options.
--noninteractive=yes

generates output for redirection into a file.

param=file

reads a file for loading options

Julien Y. Dutheil.