Man page - bam2starch_gnuparallel(1)
Packages contas this manual
- bam2starch_sge(1)
- closest-features(1)
- bam2starch(1)
- unstarch(1)
- psl2starch(1)
- gff2starch(1)
- starchstrip(1)
- bam2bed_slurm(1)
- starchcat(1)
- vcf2starch(1)
- bedmap(1)
- starchcluster_slurm(1)
- wig2bed(1)
- rmsk2starch(1)
- wig2starch(1)
- bedops-starch(1)
- bam2bed(1)
- bam2bed_sge(1)
- sort-bed(1)
- psl2bed(1)
- gtf2starch(1)
- gtf2bed(1)
- vcf2bed(1)
- bam2starch_slurm(1)
- convert2bed(1)
- bedops(1)
- gff2bed(1)
- sam2starch(1)
- sam2bed(1)
- bedextract(1)
- starchcluster_sge(1)
- gvf2bed(1)
- rmsk2bed(1)
- gvf2starch(1)
Package: bedops
apt-get install bedops
apt-get install bedops
Manuals in package:
Documentations in package:
Manual
| BAM2STARCH_GNUPARALLEL(1) | User Commands | BAM2STARCH_GNUPARALLEL(1) |
NAME
bam2starch_gnuParallel - manual page for bam2starch_gnuParallel 2.4.41+dfsg
SYNOPSIS
bam2starch_gnuParallel [--help] [--clean] <input-indexed-bam-file> [output-starch-file]
DESCRIPTION
- Pass in the name of an indexed BAM file to create a Starch file using GNU Parallel.
- (stdin isn't supported through this wrapper script.)
- Add --clean to remove <input-indexed-bam-file> after starching it up.
- You can pass in the name of the output Starch archive to be created. Otherwise, the output will have the same name as the input file, with an additional
- '.bed' ending.
- If the input file ends with '.bam', that will be stripped off.
SEE ALSO
The full documentation for bam2starch_gnuParallel is maintained as a Texinfo manual. If the info and bam2starch_gnuParallel programs are properly installed at your site, the command
- info bam2starch_gnuParallel
should give you access to the complete manual.
| December 2024 | bam2starch_gnuParallel 2.4.41+dfsg |