Man page - arden-analyze(1)

Packages contains this manual

Package:  arden
apt-get install arden

Manuals in package:
• arden-create(1)
• arden-analyze(1)
• arden-filter(1)
Documentations in package:
• arden

Manual

ARDEN-ANALYZE

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

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NAME

arden-analyze - analyze the results of the artificial reference genome mapping

SYNOPSIS

arden-analyze [ options ] [ INPUT FILE ] [ OUTPUTFOLDER ] ...

DESCRIPTION

Script to analyze the results of the artificial reference genome mapping. This script identifies the putative TPs / FPs on a specific data set (reads).

OPTIONS

OUTPUTFOLDER

path to output destination folder.

INPUT FILE

ppath to ini file. To get the required format have a look at the example files.

--version

show program’s version number and exit

-h , --help

show this help message and exit

-p PHRED, --phred = PHRED

Specify the PHRED encoding of the input reads i.e. Illumina 1.3+ = -p 33.[default: 33]

-r RANK, --internalrank = RANK

Use internal ranking for reads (needed if the read names cannot be lexicographically be sorted in the same way in python and your OS by sam tools).[default:1]

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