Man page - ali2gff(1)

Packages contains this manual

Package:  gff2aplot
apt-get install gff2aplot

Manuals in package:
• gff2aplot(1)
• parseblast(1)
• blat2gff(1)
• ali2gff(1)
• sim2gff(1)
Documentations in package:
• gff2aplot

Manual

ALI2GFF

NAME
SYNOPSIS
OPTIONS
SEE ALSO
AUTHOR

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NAME

ali2gff - Module to translate a MUMmer output files into gff formatted output.

SYNOPSIS

ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>

OPTIONS

-h, --help

Show summary of options.

-r

Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis).

-t <.|0|1|2>

Put label ’frame’ in gff output.

-x <name>

Specify the species name for species1 (default: "Seq1").

-y <name>

Specify the species name for species2 (default: "Seq2").

	-i		Ignore full sequence identities.
	-f		Write output to file.

SEE ALSO

blat2gff (1), gff2aplot (1), parseblast (1), sim2gff (1).

AUTHOR

ali2gff was written by Steffi Gebauer-Jung.

This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).

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