Man page - nanolyse(1)

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Package:  nanolyse
apt-get install nanolyse

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• nanolyse

Manual

NANOLYSE

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
optional arguments:
General options:
EXAMPLES:
AUTHOR

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NAME

NanoLyse - remove lambda phage reads from a fastq file

SYNOPSIS

NanoLyse [-h] [-v] [-r REFERENCE] [--logfile LOGFILE]

DESCRIPTION

Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.

OPTIONS

optional arguments:

-r , --reference REFERENCE

Specify a reference fasta file against which to filter.

--logfile LOGFILE

Specify the path and filename for the log file.

General options:

-h , --help

show the help and exit

-v , --version

Print version and exit.

EXAMPLES:

gunzip -c reads.fastq.gz | NanoLyse | gzip > reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse | NanoFilt -q 12 | gzip > filtered_reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse --reference mygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

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