Man page - mapmers-depth(1)

Packages contains this manual

Package:  meryl
apt-get install meryl

Manuals in package:
• simple(1)
• meryl(1)
• kmer-mask(1)
Documentations in package:
• meryl

Manual

MAPMERS-DEPTH

NAME
SYNOPSIS
OPTIONS
Modes of operation
General
SEE ALSO

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NAME

mapMers-depth - report information about mapping kmers to sequences

SYNOPSIS

mapMers-depth { -count | -depth | -stats } -mers MERYL -m MERSIZE -seq IN.FASTA

OPTIONS

Modes of operation

For sequence ordinal ’s’ and position in that sequence ’p’:

-count

reports the count (c) of the single kmer that starts at position (p).

Format: ’s p c’

-depth

reports the number (n) of kmers that span position (p).

Format: ’s p n’

-stats

reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). also reports total count (t) and number of kmers (n)

Format: ’s p m M a t n’

General

-m MERSIZE
-mers MERYL

meryl (1) database

-seq IN.FASTA

fasta input sequence

SEE ALSO

meryl (1), mapMers (1)

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