Man page - mapmers-depth(1)
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Manual
| MAPMERS-DEPTH(1) | User Commands | MAPMERS-DEPTH(1) |
NAME
mapMers-depth - report information about mapping kmers to sequences
SYNOPSIS
mapMers-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE -seq IN.FASTA
OPTIONS
Modes of operation
For sequence ordinal 's' and position in that sequence 'p':
- -count
- reports the count (c) of the single kmer that starts at position (p).
- Format: 's p c'
- -depth
- reports the number (n) of kmers that span position (p).
- Format: 's p n'
- -stats
- reports the minimum (m), maximum (M), and average (a) count of all mers that span position (p). also reports total count (t) and number of kmers (n)
- Format: 's p m M a t n'
General
- -m MERSIZE
- -mers MERYL
- meryl(1) database
- -seq IN.FASTA
- fasta input sequence
SEE ALSO
meryl(1), mapMers(1)
| May 2015 | mapMers-depth 0~20150520+2004 |