Man page - mapmers(1)

Packages contains this manual

Package:  meryl
apt-get install meryl

Manuals in package:
• simple(1)
• meryl(1)
• kmer-mask(1)
Documentations in package:
• meryl

Manual

MAPMERS

NAME
SYNOPSIS
OPTIONS
SEE ALSO

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NAME

mapMers - report statistics of mapping kmers to sequences

SYNOPSIS

mapMers { -stats | -regions | -details } -m mersize -mers mers -seq fasta

OPTIONS

-stats

reports the mean, minimum, and maximum for each sequence, along with a log2 histogram of the counts

-regions

reports regions with kmer coverage

-details

reports the forward and reverse count in the database for each kmer in the sequence

-m mersize
-mers mers

the meryl (1) database

-seq fasta

input sequence file

SEE ALSO

meryl (1), mapMers-depth (1)

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